ThermusQ: Toward the cell simulation platform for Thermus thermophilus.

Thermophiles comparative genomics computer simulation data science genome bioinformatics membrane protein

Journal

The Journal of general and applied microbiology
ISSN: 1349-8037
Titre abrégé: J Gen Appl Microbiol
Pays: Japan
ID NLM: 0165543

Informations de publication

Date de publication:
15 Nov 2023
Historique:
medline: 17 11 2023
pubmed: 18 7 2023
entrez: 17 7 2023
Statut: ppublish

Résumé

ThermusQ is a website (https://www.thermusq.net/) that aims to gather all the molecular information on Thermus thermophilus and to provide a platform to easily access the whole view of the bacterium. ThermusQ comprises the genome sequences of 22 strains from T. thermophilus and T. oshimai strains, plus the sequences of known Thermus phages. ThermusQ also contains information and map diagrams of pathways unique to Thermus strains. The website provides tools to retrieve sequence data in different ways. By gathering the whole data of T. thermophilus strains, the strainspecific characteristics was found. This bird's-eye view of the whole data will lead the research community to identify missing important data and the integration will provide a platform to conduct future biochemical simulations of the bacterium.

Identifiants

pubmed: 37460312
doi: 10.2323/jgam.2023.07.001
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

59-67

Auteurs

Atsushi Hijikata (A)

School of Life Sciences, Tokyo University of Pharmacy and Life Sciences.

Tairo Oshima (T)

Institute of Environmental Microbiology, Kyowa Kako Co., Ltd.

Kei Yura (K)

Graduate School of Humanities and Sciences, Ochanomizu University.
Center for Interdisciplinary AI and Data Science, Ochanomizu University.
Graduate School of Advanced Science and Engineering, Waseda University.

Yoshitaka Bessho (Y)

Center for Interdisciplinary AI and Data Science, Ochanomizu University.
RIKEN SPring-8 Center, Harima Institute.

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Classifications MeSH