An expandable, modular de novo protein platform for precision redox engineering.


Journal

Proceedings of the National Academy of Sciences of the United States of America
ISSN: 1091-6490
Titre abrégé: Proc Natl Acad Sci U S A
Pays: United States
ID NLM: 7505876

Informations de publication

Date de publication:
08 2023
Historique:
medline: 26 7 2023
pubmed: 24 7 2023
entrez: 24 7 2023
Statut: ppublish

Résumé

The electron-conducting circuitry of life represents an as-yet untapped resource of exquisite, nanoscale biomolecular engineering. Here, we report the characterization and structure of a de novo diheme "maquette" protein, 4D2, which we subsequently use to create an expanded, modular platform for heme protein design. A well-folded monoheme variant was created by computational redesign, which was then utilized for the experimental validation of continuum electrostatic redox potential calculations. This demonstrates how fundamental biophysical properties can be predicted and fine-tuned. 4D2 was then extended into a tetraheme helical bundle, representing a 7 nm molecular wire. Despite a molecular weight of only 24 kDa, electron cryomicroscopy illustrated a remarkable level of detail, indicating the positioning of the secondary structure and the heme cofactors. This robust, expressible, highly thermostable and readily designable modular platform presents a valuable resource for redox protein design and the future construction of artificial electron-conducting circuitry.

Identifiants

pubmed: 37487099
doi: 10.1073/pnas.2306046120
pmc: PMC10400981
doi:

Substances chimiques

Hemeproteins 0

Types de publication

Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S.

Langues

eng

Sous-ensembles de citation

IM

Pagination

e2306046120

Subventions

Organisme : European Research Council
ID : 101021207
Pays : International
Organisme : Biotechnology and Biological Sciences Research Council
ID : BB/M009122/1
Pays : United Kingdom
Organisme : Wellcome Trust
ID : 210701/Z/18/Z
Pays : United Kingdom
Organisme : Biotechnology and Biological Sciences Research Council
ID : BB/T008741/1
Pays : United Kingdom
Organisme : Biotechnology and Biological Sciences Research Council
ID : BB/R016445/1
Pays : United Kingdom
Organisme : Wellcome Trust
ID : 202804/Z/16/Z
Pays : United Kingdom
Organisme : Wellcome Trust
Pays : United Kingdom
Organisme : Biotechnology and Biological Sciences Research Council
ID : BBW003449/1
Pays : United Kingdom
Organisme : Wellcome Trust
ID : 206181/Z/17/Z
Pays : United Kingdom
Organisme : Biotechnology and Biological Sciences Research Council
ID : BB/M02315X/1
Pays : United Kingdom
Organisme : Biotechnology and Biological Sciences Research Council
ID : BB/L01386X/1
Pays : United Kingdom
Organisme : Biotechnology and Biological Sciences Research Council
ID : BB/R000484/1
Pays : United Kingdom
Organisme : Biotechnology and Biological Sciences Research Council
ID : BB/M025624/1
Pays : United Kingdom

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Auteurs

George H Hutchins (GH)

School of Biochemistry, University of Bristol, University Walk, Bristol BS8 1TD, United Kingdom.

Claire E M Noble (CEM)

School of Biochemistry, University of Bristol, University Walk, Bristol BS8 1TD, United Kingdom.
BrisSynBio Synthetic Biology Research Centre, Life Sciences Building, University of Bristol, Bristol BS8 1TQ, United Kingdom.

H Adrian Bunzel (HA)

School of Biochemistry, University of Bristol, University Walk, Bristol BS8 1TD, United Kingdom.

Christopher Williams (C)

School of Chemistry, University of Bristol, Bristol BS8 1TS, United Kingdom.

Paulina Dubiel (P)

School of Biochemistry, University of Bristol, University Walk, Bristol BS8 1TD, United Kingdom.

Sathish K N Yadav (SKN)

School of Biochemistry, University of Bristol, University Walk, Bristol BS8 1TD, United Kingdom.

Paul M Molinaro (PM)

Department of Physics, The City College of New York, New York, NY 10031.
Graduate Programs of Physics, Biology, Chemistry and Biochemistry, The Graduate Center of The City University of New York, New York, NY 10016.

Rob Barringer (R)

School of Biochemistry, University of Bristol, University Walk, Bristol BS8 1TD, United Kingdom.

Hector Blackburn (H)

School of Biochemistry, University of Bristol, University Walk, Bristol BS8 1TD, United Kingdom.

Benjamin J Hardy (BJ)

School of Biochemistry, University of Bristol, University Walk, Bristol BS8 1TD, United Kingdom.

Alice E Parnell (AE)

School of Biochemistry, University of Bristol, University Walk, Bristol BS8 1TD, United Kingdom.
BrisSynBio Synthetic Biology Research Centre, Life Sciences Building, University of Bristol, Bristol BS8 1TQ, United Kingdom.

Charles Landau (C)

School of Biochemistry, University of Bristol, University Walk, Bristol BS8 1TD, United Kingdom.

Paul R Race (PR)

School of Biochemistry, University of Bristol, University Walk, Bristol BS8 1TD, United Kingdom.
BrisSynBio Synthetic Biology Research Centre, Life Sciences Building, University of Bristol, Bristol BS8 1TQ, United Kingdom.

Thomas A A Oliver (TAA)

School of Chemistry, University of Bristol, Bristol BS8 1TS, United Kingdom.

Ronald L Koder (RL)

Department of Physics, The City College of New York, New York, NY 10031.
Graduate Programs of Physics, Biology, Chemistry and Biochemistry, The Graduate Center of The City University of New York, New York, NY 10016.

Matthew P Crump (MP)

School of Chemistry, University of Bristol, Bristol BS8 1TS, United Kingdom.

Christiane Schaffitzel (C)

School of Biochemistry, University of Bristol, University Walk, Bristol BS8 1TD, United Kingdom.

A Sofia F Oliveira (ASF)

School of Biochemistry, University of Bristol, University Walk, Bristol BS8 1TD, United Kingdom.
School of Chemistry, University of Bristol, Bristol BS8 1TS, United Kingdom.

Adrian J Mulholland (AJ)

BrisSynBio Synthetic Biology Research Centre, Life Sciences Building, University of Bristol, Bristol BS8 1TQ, United Kingdom.
School of Chemistry, University of Bristol, Bristol BS8 1TS, United Kingdom.

J L Ross Anderson (JLR)

School of Biochemistry, University of Bristol, University Walk, Bristol BS8 1TD, United Kingdom.
BrisSynBio Synthetic Biology Research Centre, Life Sciences Building, University of Bristol, Bristol BS8 1TQ, United Kingdom.

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Classifications MeSH