Microevolutionary processes analysis in the Lithuanian genome.


Journal

Scientific reports
ISSN: 2045-2322
Titre abrégé: Sci Rep
Pays: England
ID NLM: 101563288

Informations de publication

Date de publication:
24 07 2023
Historique:
received: 09 05 2023
accepted: 21 07 2023
medline: 27 7 2023
pubmed: 25 7 2023
entrez: 24 7 2023
Statut: epublish

Résumé

Differences in the relative fitness of genomic variants are foundational, without these, neither natural selection nor adaption can exist. This research analyzed two microevolutionary forces, mutations, and positive selection, using whole genome sequencing data from Lithuanians across three generations: newborns (generation I), their parents (generation II), 60 years old Lithuanians, and the root ancestors (generation III). The main objective was to determine the frequency of mutations under selection in modern humans and how allele frequencies change across generations. Our results show that going through all the landscapes of the relative fitness on each chromosome, the general relative fitness background pattern remains the same in analysed generations. However, the tendency of relative fitness to decrease, in general, is noted. We hypothesize that the de novo genome variants or genome variants with a very low frequency that formed in the previous generation did not have time to be as affected by natural selection, thus, in the following generation, the force of natural selection acting on them is greater and their cumulative relative fitness also decreases. The strong natural selection pressure on the genetic regions that encode the NEGR1 and PTPN1/PTNP21 genes were also identified, highlighting the evolution of the Lithuanian population's genome over generations, and possible genomic "deficiencies" for better adaptation.

Identifiants

pubmed: 37488273
doi: 10.1038/s41598-023-39249-5
pii: 10.1038/s41598-023-39249-5
pmc: PMC10366082
doi:

Banques de données

figshare
['10.6084/m9.figshare.22952774']

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

11941

Informations de copyright

© 2023. The Author(s).

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Auteurs

Laura Pranckėnienė (L)

Department of Human and Medical Genetics, Faculty of Medicine, Biomedical Science Institute, Vilnius University, Santariskiu Street 2, 08661, Vilnius, Lithuania. laura.pranckeniene@gmail.com.

Alina Urnikytė (A)

Department of Human and Medical Genetics, Faculty of Medicine, Biomedical Science Institute, Vilnius University, Santariskiu Street 2, 08661, Vilnius, Lithuania. alina.urnikyte@mf.vu.lt.

Vaidutis Kučinskas (V)

Department of Human and Medical Genetics, Faculty of Medicine, Biomedical Science Institute, Vilnius University, Santariskiu Street 2, 08661, Vilnius, Lithuania.

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Classifications MeSH