Topological data analysis for revealing dynamic brain reconfiguration in MEG data.
Dynamic functional connectivity
MEG
Mapper
Sensory motor
Topological data analysis
Working memory
Journal
PeerJ
ISSN: 2167-8359
Titre abrégé: PeerJ
Pays: United States
ID NLM: 101603425
Informations de publication
Date de publication:
2023
2023
Historique:
received:
13
01
2023
accepted:
16
06
2023
medline:
26
7
2023
pubmed:
25
7
2023
entrez:
25
7
2023
Statut:
epublish
Résumé
In recent years, the focus of the functional connectivity community has shifted from stationary approaches to the ones that include temporal dynamics. Especially, non-invasive electrophysiological data (magnetoencephalography/electroencephalography (MEG/EEG)) with high temporal resolution and good spatial coverage have made it possible to measure the fast alterations in the neural activity in the brain during ongoing cognition. In this article, we analyze dynamic brain reconfiguration using MEG images collected from subjects during the rest and the cognitive tasks. Our proposed topological data analysis method, called Mapper, produces biomarkers that differentiate cognitive tasks without prior spatial and temporal collapse of the data. The suggested method provides an interactive visualization of the rapid fluctuations in electrophysiological data during motor and cognitive tasks; hence, it has the potential to extract clinically relevant information at an individual level without temporal and spatial collapse.
Identifiants
pubmed: 37489123
doi: 10.7717/peerj.15721
pii: 15721
pmc: PMC10363343
doi:
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
e15721Informations de copyright
©2023 Duman and Tatar.
Déclaration de conflit d'intérêts
The authors declare there are no competing interests.
Références
Proc Natl Acad Sci U S A. 2010 Mar 30;107(13):6040-5
pubmed: 20304792
Comput Math Methods Med. 2017;2017:4198430
pubmed: 28191030
Netw Neurosci. 2021 Jun 03;5(2):549-568
pubmed: 34189377
Hum Brain Mapp. 2016 Aug;37(8):2918-30
pubmed: 27120982
Neuroimage. 2010 May 15;51(1):102-11
pubmed: 20123024
Neuroimage. 2016 Jan 15;125:643-656
pubmed: 26285079
Soc Cogn Affect Neurosci. 2011 Oct;6(5):548-55
pubmed: 20855296
Sci Rep. 2020 Oct 14;10(1):17320
pubmed: 33057130
Brain Sci. 2019 Jun 19;9(6):
pubmed: 31248185
IEEE Trans Neural Syst Rehabil Eng. 2015 Jul;23(4):713-23
pubmed: 26151748
Sci Rep. 2013;3:1236
pubmed: 23393618
Brain Connect. 2011;1(1):49-59
pubmed: 22432954
Sci Data. 2022 Jun 8;9(1):278
pubmed: 35676293
Neuroimage. 2011 Jan 15;54(2):1465-75
pubmed: 20884358
Neuroimage Clin. 2014 Jul 24;5:298-308
pubmed: 25161896
Netw Neurosci. 2019 Jul 01;3(3):763-778
pubmed: 31410378
Front Neurosci. 2021 Aug 23;15:696639
pubmed: 34497485
eNeuro. 2019 Nov 15;6(6):
pubmed: 31685674
Netw Neurosci. 2023 Jun 30;7(2):431-460
pubmed: 37397880
Proc Natl Acad Sci U S A. 2012 Nov 13;109(46):18661-8
pubmed: 23112199
Elife. 2014 Mar 25;3:e01867
pubmed: 24668169
Proc Natl Acad Sci U S A. 2011 May 3;108(18):7641-6
pubmed: 21502525
Neuroimage. 2013 Oct 15;80:190-201
pubmed: 23702419
Hum Brain Mapp. 2008 Sep;29(9):1040-52
pubmed: 17935181
Science. 2000 Dec 22;290(5500):2319-23
pubmed: 11125149
J Neurosci. 2017 Jan 25;37(4):839-853
pubmed: 28123020
Front Hum Neurosci. 2012 Dec 28;6:339
pubmed: 23293596
Netw Neurosci. 2019 Jul 01;3(3):744-762
pubmed: 31410377
Front Hum Neurosci. 2014 Nov 07;8:897
pubmed: 25426048
PLoS Comput Biol. 2013;9(9):e1003171
pubmed: 24086116
Brain Struct Funct. 2022 Apr;227(3):741-762
pubmed: 35142909
Curr Opin Neurobiol. 2013 Apr;23(2):162-71
pubmed: 23294553
Neuroimage. 2008 Jun;41(2):354-62
pubmed: 18394927
Proc Natl Acad Sci U S A. 2022 Aug 2;119(31):e2201128119
pubmed: 35881787
Front Syst Neurosci. 2016 Jan 08;9:175
pubmed: 26778976
PLoS Comput Biol. 2015 Aug 28;11(8):e1004445
pubmed: 26317432
Neuroimage. 2016 Feb 1;126:81-95
pubmed: 26631815
Phys Rev E. 2019 Sep;100(3-1):032414
pubmed: 31640025
J Neuropsychiatry Clin Neurosci. 2017 Summer;29(3):275-283
pubmed: 28238273
Neuroimage. 2017 Oct 15;160:41-54
pubmed: 28034766
IEEE Trans Med Imaging. 2022 Sep;41(9):2285-2303
pubmed: 35320090
Sci Rep. 2017 Feb 07;7:42117
pubmed: 28169349
Neuroimage. 2007 Mar;35(1):396-405
pubmed: 17239622
Proc Natl Acad Sci U S A. 2006 Jun 6;103(23):8577-82
pubmed: 16723398
Neuroimage. 2010 Mar;50(1):81-98
pubmed: 20006716
Annu Rev Psychol. 2016;67:613-40
pubmed: 26393868
PLoS One. 2017 Aug 22;12(8):e0182603
pubmed: 28829775
Neurosci Biobehav Rev. 2015 Feb;49:105-13
pubmed: 25526823
Neuron. 2012 Feb 9;73(3):415-34
pubmed: 22325196
Sci Rep. 2022 Sep 14;12(1):15475
pubmed: 36104360
Phys Med Biol. 2015 Nov 7;60(21):R271-95
pubmed: 26447925
PLoS One. 2014 Apr 03;9(4):e93673
pubmed: 24699668
Netw Neurosci. 2022 Jul 01;6(3):665-701
pubmed: 36607180
Front Comput Neurosci. 2017 Feb 09;11:7
pubmed: 28232797
PLoS One. 2022 Feb 24;17(2):e0263159
pubmed: 35202420
Clin Neurophysiol. 1999 Nov;110(11):1842-57
pubmed: 10576479
Neuroimage. 2013 Oct 15;80:169-89
pubmed: 23684877
Neuroimage. 2011 May 15;56(2):616-26
pubmed: 20541019
Brain Connect. 2011;1(1):13-36
pubmed: 22432952
Nat Commun. 2018 Jul 30;9(1):2987
pubmed: 30061566
Neuroimage. 2017 Feb 1;146:667-678
pubmed: 27639354
J Vis. 2011 Apr 26;11(4):
pubmed: 21521832
J Neurosci Methods. 2013 Jan 30;212(2):259-68
pubmed: 23142223
Front Hum Neurosci. 2009 Oct 23;3:32
pubmed: 19893761
Proc Natl Acad Sci U S A. 2012 Feb 21;109(8):3131-6
pubmed: 22323591
Neuroimage. 2022 Dec 1;264:119686
pubmed: 36273770
Nat Commun. 2022 Aug 15;13(1):4791
pubmed: 35970984
Nat Commun. 2018 Mar 20;9(1):1157
pubmed: 29559638
Neuroimage. 2012 Oct 1;62(4):2222-31
pubmed: 22366334
Front Hum Neurosci. 2020 Sep 07;14:580813
pubmed: 33132887
Nat Commun. 2018 Apr 11;9(1):1399
pubmed: 29643350
Netw Neurosci. 2022 Jun 01;6(2):467-498
pubmed: 35733428
Hum Brain Mapp. 2002 Mar;15(3):175-98
pubmed: 11835608
Neuroimage. 2016 May 15;132:425-438
pubmed: 26908313
Proc Natl Acad Sci U S A. 2013 Nov 12;110(46):18566-71
pubmed: 24170857
Hum Brain Mapp. 2014 Sep;35(9):4904-15
pubmed: 24737721
Neuroimage. 2018 Oct 15;180(Pt B):577-593
pubmed: 29196270
Front Comput Neurosci. 2020 Jan 15;13:90
pubmed: 32009921
Cereb Cortex. 2014 Mar;24(3):663-76
pubmed: 23146964
Hum Brain Mapp. 2017 Oct;38(10):4980-4995
pubmed: 28670685
Epilepsia. 2014 Sep;55(9):1380-8
pubmed: 25060924
Sci Transl Med. 2015 Oct 28;7(311):311ra174
pubmed: 26511511
Neuroimage. 2013 Oct 15;80:360-78
pubmed: 23707587
Proc Natl Acad Sci U S A. 2013 Mar 12;110(11):4392-7
pubmed: 23440216
Neuroimage. 2018 Oct 15;180(Pt B):559-576
pubmed: 28988134
Nat Commun. 2015 Oct 14;6:8581
pubmed: 26466022