Rapid genome functional annotation pipeline anchored to the house sparrow (
Passer domesticus
RNA-Seq
annotation pipeline
birds
gene annotation
intestine
Journal
Biology methods & protocols
ISSN: 2396-8923
Titre abrégé: Biol Methods Protoc
Pays: England
ID NLM: 101693064
Informations de publication
Date de publication:
2023
2023
Historique:
received:
27
04
2023
revised:
26
06
2023
accepted:
05
07
2023
medline:
31
7
2023
pubmed:
31
7
2023
entrez:
31
7
2023
Statut:
epublish
Résumé
The house sparrow (
Identifiants
pubmed: 37521110
doi: 10.1093/biomethods/bpad013
pii: bpad013
pmc: PMC10373626
doi:
Types de publication
Journal Article
Langues
eng
Pagination
bpad013Informations de copyright
© The Author(s) 2023. Published by Oxford University Press.
Références
Bioinformatics. 2014 Apr 1;30(7):923-30
pubmed: 24227677
Nat Biotechnol. 2010 May;28(5):511-5
pubmed: 20436464
Mol Biol Evol. 2021 Dec 9;38(12):5825-5829
pubmed: 34597405
Bioinformatics. 2023 Jan 1;39(1):
pubmed: 36648328
Bioinformatics. 2014 May 1;30(9):1236-40
pubmed: 24451626
Cold Spring Harb Perspect Biol. 2019 Oct 1;11(10):
pubmed: 30181377
Nat Biotechnol. 2019 Aug;37(8):907-915
pubmed: 31375807
Data Brief. 2020 Jul 20;32:106041
pubmed: 32775561
Comp Biochem Physiol A Mol Integr Physiol. 2000 Jan;125(1):11-24
pubmed: 10779727
J Exp Biol. 2017 Aug 1;220(Pt 15):2733-2742
pubmed: 28495873
Nucleic Acids Res. 2023 Jan 6;51(D1):D141-D144
pubmed: 36350640
Database (Oxford). 2016 Jun 23;2016:
pubmed: 27337980
Cells. 2019 Jun 21;8(6):
pubmed: 31234415
Genome Res. 2010 Jan;20(1):45-58
pubmed: 19858364
PeerJ. 2014 May 22;2:e396
pubmed: 24883256
Annu Rev Physiol. 2011;73:69-93
pubmed: 21314432
Brief Bioinform. 2013 Mar;14(2):178-92
pubmed: 22517427
Gigascience. 2015 Oct 19;4:48
pubmed: 26500767
Curr Protoc. 2021 Dec;1(12):e323
pubmed: 34936221
Comp Biochem Physiol A Mol Integr Physiol. 2021 Mar;253:110860
pubmed: 33276129
PLoS One. 2010 Jul 06;5(7):e9780
pubmed: 20625404
Nucleic Acids Res. 2019 Jan 8;47(D1):D807-D811
pubmed: 30395283
Protein Sci. 2022 Jan;31(1):8-22
pubmed: 34717010
Nucleic Acids Res. 2019 Jan 8;47(D1):D745-D751
pubmed: 30407521
Methods Mol Biol. 2019;1962:161-177
pubmed: 31020559
Cell. 2014 Apr 10;157(2):433-446
pubmed: 24725409
Nat Biotechnol. 2010 May;28(5):503-10
pubmed: 20436462
Mol Ecol. 2010 Mar;19 Suppl 1:266-76
pubmed: 20331785