Cryogenic X-ray crystallographic studies of biomacromolecules at Turkish Light Source "

X-ray crystallography atomic resolution drug development drug repurposing light source structural biology structural dynamics

Journal

Turkish journal of biology = Turk biyoloji dergisi
ISSN: 1303-6092
Titre abrégé: Turk J Biol
Pays: Turkey
ID NLM: 9434434

Informations de publication

Date de publication:
2023
Historique:
received: 09 09 2022
revised: 22 02 2023
accepted: 11 01 2023
medline: 2 8 2023
pubmed: 2 8 2023
entrez: 2 8 2023
Statut: epublish

Résumé

X-ray crystallography is a robust and powerful structural biology technique that provides high-resolution atomic structures of biomacromolecules. Scientists use this technique to unravel mechanistic and structural details of biological macromolecules (e.g., proteins, nucleic acids, protein complexes, protein-nucleic acid complexes, or large biological compartments). Since its inception, single-crystal cryocrystallography has never been performed in Türkiye due to the lack of a single-crystal X-ray diffractometer. The X-ray diffraction facility recently established at the University of Health Sciences, İstanbul, Türkiye will enable Turkish and international researchers to easily perform high-resolution structural analysis of biomacromolecules from single crystals. Here, we describe the technical and practical outlook of a state-of-the-art home-source X-ray, using lysozyme as a model protein. The methods and practice described in this article can be applied to any biological sample for structural studies. Therefore, this article will be a valuable practical guide from sample preparation to data analysis.

Identifiants

pubmed: 37529114
doi: 10.55730/1300-0152.2637
pii: turkjbiol-47-1-1
pmc: PMC10387866
doi:

Types de publication

Journal Article

Langues

eng

Pagination

1-13

Informations de copyright

© TÜBİTAK.

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Auteurs

Necati Atalay (N)

Department of Molecular Biology and Genetics, Faculty of Science, Koç University, İstanbul, Türkiye.
Department of Molecular Biology and Genetics, Faculty of Science, Gebze Technical University, Kocaeli, Türkiye.
Experimental Medicine Application & Research Center, University of Health Sciences Türkiye, İstanbul, Türkiye.

Enver Kamil Akcan (EK)

Department of Molecular Biology and Genetics, Faculty of Science, Koç University, İstanbul, Türkiye.
Department of Molecular Biology and Genetics, Faculty of Science and Letters, İstanbul Technical University, İstanbul, Türkiye.

Mehmet Gül (M)

Department of Molecular Biology and Genetics, Faculty of Science, Koç University, İstanbul, Türkiye.

Esra Ayan (E)

Department of Molecular Biology and Genetics, Faculty of Science, Koç University, İstanbul, Türkiye.

Ebru Destan (E)

Department of Molecular Biology and Genetics, Faculty of Science, Koç University, İstanbul, Türkiye.

Fatma Betül Ertem (FB)

Department of Molecular Biology and Genetics, Faculty of Science, Koç University, İstanbul, Türkiye.

Nurettin Tokay (N)

Department of Molecular Biology and Genetics, Faculty of Science, Koç University, İstanbul, Türkiye.

Barış Çakilkaya (B)

Department of Molecular Biology and Genetics, Faculty of Science, Koç University, İstanbul, Türkiye.

Zeliş Nergiz (Z)

Department of Molecular Biology and Genetics, Faculty of Science, Koç University, İstanbul, Türkiye.
Koç University İşbank Center for Infectious Diseases (KUISCID), Koç University, İstanbul, Türkiye.

Gözde Karakadioğlu (G)

Department of Molecular Biology and Genetics, Faculty of Science, Koç University, İstanbul, Türkiye.

Abdullah Kepceoğlu (A)

Department of Molecular Biology and Genetics, Faculty of Science, Koç University, İstanbul, Türkiye.

İlkin Yapici (İ)

Department of Molecular Biology and Genetics, Faculty of Science, Koç University, İstanbul, Türkiye.

Bilge Tosun (B)

Department of Molecular Biology and Genetics, Faculty of Science, Koç University, İstanbul, Türkiye.

Nilüfer Baldir (N)

Department of Molecular Biology and Genetics, Faculty of Science, Koç University, İstanbul, Türkiye.

Günseli Yildirim (G)

Department of Molecular Biology and Genetics, Faculty of Science, Koç University, İstanbul, Türkiye.

J Austin Johnson (JA)

Department of Molecular Biology and Genetics, Faculty of Science, Koç University, İstanbul, Türkiye.

Ömür Güven (Ö)

Department of Molecular Biology and Genetics, Faculty of Science, Koç University, İstanbul, Türkiye.

Alaleh Shafiei (A)

Department of Molecular Biology and Genetics, Faculty of Science, Koç University, İstanbul, Türkiye.

Nazlı Eylül Arslan (NE)

Department of Molecular Biology and Genetics, Faculty of Science, Koç University, İstanbul, Türkiye.
Department of Molecular Biology and Genetics, Faculty of Science and Letters, İstanbul Arel University, İstanbul, Türkiye.

Merve Yilmaz (M)

Department of Molecular Biology and Genetics, Faculty of Science, Koç University, İstanbul, Türkiye.

Cahine Kulakman (C)

Department of Molecular Biology and Genetics, Faculty of Science, Koç University, İstanbul, Türkiye.

Seyide Seda Paydos (SS)

Department of Molecular Biology and Genetics, Faculty of Science, Koç University, İstanbul, Türkiye.

Zeynep Sena Çinal (ZS)

Department of Molecular Biology and Genetics, Faculty of Science, Koç University, İstanbul, Türkiye.
Department of Molecular Biology and Genetics, Faculty of Science, Bilkent University, Ankara, Türkiye.

Kardelen Şabanoğlu (K)

Department of Molecular Biology and Genetics, Faculty of Science, Koç University, İstanbul, Türkiye.
Department of Molecular Biology and Genetics, Faculty of Arts and Sciences, Yıldız Technical University, İstanbul, Türkiye.

Ayşegül Pazarçeviren (A)

Department of Molecular Biology and Genetics, Faculty of Science, Koç University, İstanbul, Türkiye.
Department of Molecular Biology and Genetics, Faculty of Science and Letters, İstanbul Technical University, İstanbul, Türkiye.

Ayşenur Yilmaz (A)

Department of Molecular Biology and Genetics, Faculty of Science, Koç University, İstanbul, Türkiye.
Department of Molecular Biology and Genetics, Faculty of Arts and Sciences, Boğaziçi University, İstanbul, Türkiye.

Başak Canbay (B)

Department of Molecular Biology and Genetics, Faculty of Science, Koç University, İstanbul, Türkiye.
Department of Molecular Biology and Genetics, Faculty of Science and Letters, İstanbul Technical University, İstanbul, Türkiye.

Bengisu Aşci (B)

Department of Molecular Biology and Genetics, Faculty of Science, Koç University, İstanbul, Türkiye.

Esra Kartal (E)

Department of Molecular Biology and Genetics, Faculty of Science, Koç University, İstanbul, Türkiye.
Department of Bioinformatics and Genetics, Faculty of Engineering and Natural Sciences, Kadir Has University, İstanbul, Türkiye.

Serra Tavli (S)

Department of Molecular Biology and Genetics, Faculty of Science, Koç University, İstanbul, Türkiye.

Mehmet Çaliseki (M)

Turkish Accelerator and Radiation Laboratory (TARLA), Ankara University, Ankara, Türkiye.
Department of Molecular Biology, Genetics and Bioengineering, Graduate School of Engineering and Natural Sciences, Sabancı University, İstanbul, Türkiye.

Günce Göç (G)

Turkish Accelerator and Radiation Laboratory (TARLA), Ankara University, Ankara, Türkiye.
Department of Biology, Faculty of Arts and Science, Kocaeli University, Kocaeli, Türkiye.

Arif Mermer (A)

Experimental Medicine Application & Research Center, University of Health Sciences Türkiye, İstanbul, Türkiye.
Department of Biotechnology, Hamidiye Institute of Health Sciences, University of Health Sciences Türkiye, İstanbul, Türkiye.

Gamze Yeşilay (G)

Experimental Medicine Application & Research Center, University of Health Sciences Türkiye, İstanbul, Türkiye.
Department of Molecular Biology and Genetics, Hamidiye Institute of Health Sciences, University of Health Sciences Türkiye, İstanbul, Türkiye.

Sevde Altuntaş (S)

Experimental Medicine Application & Research Center, University of Health Sciences Türkiye, İstanbul, Türkiye.
Department of Tissue Engineering, Hamidiye Institute of Health Sciences, University of Health Sciences Türkiye, İstanbul, Türkiye.

Hiroshi Tateishi (H)

Medicinal and Biological Chemistry Science Farm Joint Research Laboratory, Faculty of Life Sciences, Kumamoto University, Kumamoto, Japan.

Masami Otsuka (M)

Medicinal and Biological Chemistry Science Farm Joint Research Laboratory, Faculty of Life Sciences, Kumamoto University, Kumamoto, Japan.
Department of Drug Discovery, Science Farm Ltd., Kumamoto, Japan.

Mikako Fujita (M)

Medicinal and Biological Chemistry Science Farm Joint Research Laboratory, Faculty of Life Sciences, Kumamoto University, Kumamoto, Japan.

Şaban Tekin (Ş)

Experimental Medicine Application & Research Center, University of Health Sciences Türkiye, İstanbul, Türkiye.
The Scientific and Technological Research Council of Türkiye (TÜBİTAK) Marmara Research Center (MAM), Life Sciences, Kocaeli, Türkiye.
Department of Basic Medical Sciences, Division of Medical Biology, Faculty of Medicine, University of Health Sciences Türkiye, İstanbul, Türkiye.

Halilibrahim Çiftçi (H)

Department of Molecular Biology and Genetics, Faculty of Science, Koç University, İstanbul, Türkiye.
Medicinal and Biological Chemistry Science Farm Joint Research Laboratory, Faculty of Life Sciences, Kumamoto University, Kumamoto, Japan.
Department of Drug Discovery, Science Farm Ltd., Kumamoto, Japan.

Serdar Durdaği (S)

Department of Biophysics, School of Medicine, Bahçeşehir University, İstanbul, Türkiye.

Gizem Dinler Doğanay (G)

Department of Molecular Biology and Genetics, Faculty of Science and Letters, İstanbul Technical University, İstanbul, Türkiye.

Ezgi Karaca (E)

İzmir Biomedicine and Genome Center, İzmir, Türkiye.
İzmir International Biomedicine and Genome Institute, Dokuz Eylül University, İzmir, Türkiye.

Burcu Kaplan Türköz (B)

Department of Food Engineering, Faculty of Engineering, Ege University, İzmir, Türkiye.

Burak Veli Kabasakal (BV)

Turkish Accelerator and Radiation Laboratory (TARLA), Ankara University, Ankara, Türkiye.
School of Biochemistry, University of Bristol, Bristol, United Kingdom.

Ahmet Kati (A)

Experimental Medicine Application & Research Center, University of Health Sciences Türkiye, İstanbul, Türkiye.
Department of Biotechnology, Hamidiye Institute of Health Sciences, University of Health Sciences Türkiye, İstanbul, Türkiye.

Hasan Demirci (H)

Department of Molecular Biology and Genetics, Faculty of Science, Koç University, İstanbul, Türkiye.
Koç University İşbank Center for Infectious Diseases (KUISCID), Koç University, İstanbul, Türkiye.
Stanford PULSE Institute, SLAC National Laboratory, Menlo Park, CA, USA.

Classifications MeSH