Integrative Prognostic Machine Learning Models in Mantle Cell Lymphoma.
Journal
Cancer research communications
ISSN: 2767-9764
Titre abrégé: Cancer Res Commun
Pays: United States
ID NLM: 9918281580506676
Informations de publication
Date de publication:
08 2023
08 2023
Historique:
received:
16
02
2023
revised:
17
04
2023
accepted:
27
06
2023
medline:
7
8
2023
pubmed:
4
8
2023
entrez:
4
8
2023
Statut:
epublish
Résumé
Patients with mantle cell lymphoma (MCL), an incurable B-cell malignancy, benefit from accurate pretreatment disease stratification. We curated an extensive database of 862 patients diagnosed between 2014 and 2022. A machine learning (ML) gradient-boosted model incorporated baseline features from clinicopathologic, cytogenetic, and genomic data with high predictive power discriminating between patients with indolent or responsive MCL and those with aggressive disease (AUC ROC = 0.83). In addition, we utilized the gradient-boosted framework as a robust feature selection method for multivariate logistic and survival modeling. The best ML models incorporated features from clinical and genomic data types highlighting the need for correlative molecular studies in precision oncology. As proof of concept, we launched our most accurate and practical models using an application interface, which has potential for clinical implementation. We designated the 20-feature ML model-based index the "integrative MIPI" or iMIPI and a similar 10-feature ML index the "integrative simplified MIPI" or iMIPI-s. The top 10 baseline prognostic features represented in the iMIPI-s are: lactase dehydrogenase (LDH), Ki-67%, platelet count, bone marrow involvement percentage, hemoglobin levels, the total number of observed somatic mutations, Our model is the first to integrate a dynamic algorithm with multiple clinical and molecular features, allowing for accurate predictions of MCL disease outcomes in a large patient cohort.
Identifiants
pubmed: 37538987
doi: 10.1158/2767-9764.CRC-23-0083
pii: CRC-23-0083
pmc: PMC10395375
doi:
Types de publication
Journal Article
Research Support, N.I.H., Extramural
Langues
eng
Sous-ensembles de citation
IM
Pagination
1435-1446Subventions
Organisme : NCI NIH HHS
ID : F99 CA274686
Pays : United States
Organisme : NCI NIH HHS
ID : U01 CA217842
Pays : United States
Informations de copyright
© 2023 The Authors; Published by the American Association for Cancer Research.
Références
Am J Hematol. 2022 May;97(5):638-656
pubmed: 35266562
J Clin Oncol. 2022 Jan 10;40(2):202-212
pubmed: 34797699
Blood Cancer J. 2020 May 22;10(5):59
pubmed: 32444689
Haematologica. 2020 Jun;105(6):1604-1612
pubmed: 31537689
J Clin Oncol. 2016 Apr 20;34(12):1386-94
pubmed: 26926679
Proc Natl Acad Sci U S A. 2006 Feb 14;103(7):2352-7
pubmed: 16461462
Nature. 2022 Jan;601(7894):623-629
pubmed: 34875674
Leukemia. 2011 Dec;25(12):1904-8
pubmed: 21720382
Nature. 2020 Jan;577(7788):89-94
pubmed: 31894144
Leukemia. 2022 Oct;36(10):2479-2487
pubmed: 35963941
Hematol Oncol Clin North Am. 2020 Oct;34(5):941-956
pubmed: 32861288
J Clin Oncol. 2008 Oct 20;26(30):4966-72
pubmed: 18606985
Blood Adv. 2020 Mar 24;4(6):1038-1050
pubmed: 32191807
Comput Biol Med. 2021 Sep;136:104664
pubmed: 34329866
Transl Cancer Res. 2021 Feb;10(2):613-626
pubmed: 35116395
Curr Nutr Rep. 2019 Sep;8(3):175-181
pubmed: 31129887
Lancet Oncol. 2022 Mar;23(3):406-415
pubmed: 35074072
Clin Lymphoma Myeloma Leuk. 2018 Nov;18(11):762-768
pubmed: 30146365
Leuk Lymphoma. 2019 Jun;60(6):1420-1428
pubmed: 30626249
J Clin Invest. 2022 Feb 1;132(3):
pubmed: 34882582
Am J Hematol. 2021 Feb 1;96(2):241-250
pubmed: 33180322
Front Oncol. 2020 Sep 15;10:1151
pubmed: 33042784
Cancers (Basel). 2019 Aug 23;11(9):
pubmed: 31450799
Haematologica. 2019 Apr;104(4):e163-e166
pubmed: 30930338
Blood. 2017 Oct 26;130(17):1903-1910
pubmed: 28819011
Cancers (Basel). 2020 Jul 31;12(8):
pubmed: 32751805
J Clin Oncol. 2014 May 1;32(13):1338-46
pubmed: 24687837
Cancers (Basel). 2021 Dec 31;14(1):
pubmed: 35008361
Blood Adv. 2020 Jul 14;4(13):2927-2938
pubmed: 32598477
Blood. 2018 Nov 8;132(19):2016-2025
pubmed: 30181173
Int J Colorectal Dis. 2022 Jul;37(7):1621-1634
pubmed: 35704090
Cancer Cell. 2022 Aug 8;40(8):879-894.e16
pubmed: 35944503
Cancer Cell. 2021 Oct 11;39(10):1422-1437.e10
pubmed: 34597589
Neuroradiol J. 2021 Aug;34(4):320-328
pubmed: 33657924
Leuk Lymphoma. 2021 Nov;62(11):2671-2678
pubmed: 34121594
Med Biol Eng Comput. 2022 Mar;60(3):663-681
pubmed: 35028863