Tumour mutational burden and survival with molecularly matched therapy.

BACKGROUND

The impact of tumour mutational burden (TMB) on outcome with molecularly matched therapy is unknown. Higher TMB could predict resistance to molecularly matched therapy through co-occurring driver mutations.

METHODS

One hundred and four patients with advanced cancers underwent molecular profiling in the DKTK-MASTER program. Fifty-five patients received systemic therapy excluding immunotherapy. Patients with molecularly matched (n = 35) or non-molecularly informed therapy (n = 20) were analysed for TMB and survival. Results were validated in an independent cohort of patients receiving molecularly matched (n = 68) or non-molecularly informed therapy (n = 40). Co-occurring driver mutations and TMB were analysed in the exploratory cohort and The Cancer Genome Atlas (TCGA) datasets.

RESULTS

Patients were stratified by the median TMB of 1.67 mutations per Megabase (mut/Mb) of 35 patients receiving molecularly matched therapy into TMB-high or TMB-low groups. Median overall survival (4 months [95% CI, 3.3-7.6] versus 12.8 months [95% CI, 10-not reached], p < 0.001) and progression-free survival (1.8 months [95% CI, 1.1-3.7] versus 7.9 months [95% CI, 2.8-17.0], p = 0.003) were significantly shorter in the TMB-high group compared to the TMB-low group. In the validation cohort, shorter OS and PFS were identified in the TMB-high group (TMB cut-off of 4 mut/Mb) treated with molecularly matched therapy. No differences were observed in patients receiving non-molecularly informed systemic therapy. A significant correlation between co-occurring driver mutations and TMB (n = 104, r = 0.78 [95% CI, 0.68-0.85], p < 0.001) was found in the exploratory cohort as well as the majority (24/33) of TCGA studies.

CONCLUSION

A high TMB was associated with unfavourable outcome in patients receiving molecularly matched therapy, indicating untargeted resistance pathways. Therefore, TMB should be further investigated as a predictive biomarker in precision oncology programs.

Informations de copyright

Copyright © 2023 Elsevier Ltd. All rights reserved.

Déclaration de conflit d'intérêts

Declaration of Competing Interest Till de Bortoli, Manuela Benary, Mario Lamping, Reinhold Schäfer and Frederick Klauschen report no potential conflicts of interest. Peter Horak reported consulting or advisory board membership for Platomics and honoraria from Platomics, Roche. Sebastian Stintzing has received honoraria/consulting or advisory role from Amgen, Bayer, Lilly, Merck KGaA, MSD, Pierre Fabre, Roche, Sanofi, Servier, Taiho Pharmaceuticals, Takeda, Boehringer Ingelheim, research funding from Merck Serono, Pierre Fabre, Roche Molecular Diagnostics, travel, accommodation and expenses support from Amgen, Bayer, Lilly, Merck KgaA, Pierre Fabre, Roche, Sanofi, Sirtex Medical and Takeda. Inge Tinhofer reports honoraria/consulting or advisory role for Merck KgaA and MerckSerono. Serge Leyvraz reports consulting or advisory role and travel expenses support from Bayer. Ulrich Keller reports a consulting role for Roche, Janssen-Cilag, Takeda, BMS, Gilead, Hexal, Pfizer, Astra-Zeneca, Pentixapharm and honoraria from Gilead, Amgen, Novartis, BMS, Roche, Takeda, MSD, as well as research funding from Celgene, Takeda, BMS, Roche, Astra-Zeneka, Novartis, MSD, Janssen-Cilag, Pfizer. Other support was declared from Roche, BMS, Gilead, Takeda, Janssen-Cilag and Celgene. Albrecht Stenzinger reported Advisory Board/Speaker’s Bureau from Aignostics, Astra Zeneca, AGCT, Bayer, BMS, Eli Lilly, Illumina, Incyte, Janssen, MSD, Novartis, Pfizer, Roche, Seattle Genetics, Takeda, Thermo Fisher and research grants from Bayer, BMS, Chugai, Incyte. Stefan Fröhling reported consulting or advisory board membership from Bayer, Illumina, Roche; honoraria: Amgen, Eli Lilly, PharmaMar, Roche and research funding from AstraZeneca, Pfizer, PharmaMar, Roche, as well as travel or accommodation expenses support from Amgen, Eli Lilly, Illumina, PharmaMar, Roche. Razelle Kurzrock has received research funding from Biological Dynamics, Boehringer Ingelheim, Debiopharm, Foundation Medicine, Genentech, Grifols, Guardant, Incyte, Konica Minolta, Medimmune, Merck Serono, Omniseq, Pfizer, Sequenom, Takeda, and TopAlliance; as well as consultant and/or speaker fees and/or advisory board for Actuate Therapeutics, AstraZeneca, Bicara Therapeutics, Biological Dynamics, EISAI, EOM Pharmaceuticals, Iylon, Merck, NeoGenomics, Neomed, Pfizer, Prosperdtx, Roche, TD2/Volastra, Turning Point Therapeutics, X-Biotech and has an equity interest in CureMatch Inc., CureMetrix, and IDbyDNA; She also serves on the Board of CureMatch and CureMetrix,and is a co-founder of CureMatch. Ulrich Keilholz has received advisory board/speaker bureau, trial support, research collaboration or research support from Amgen, AstraZeneca, BMS, Boehringer Ingelheim, Glycotope, Innate, Lilly, Medimmune, MerckSerono, MSD/Merck, Novartis, Pfizer, Roche/Genentech and Sirtex. Damian Rieke has received consultant and/or advisory board and/or speaker fees from Bayer, Bristol-Myers Squibb and Lilly. Ivan Jelas has received consultant and/or advisory board and/or speaker fees from Bristol-Myers Squibb, Merck and Roche.