Validation of a metabolite-GWAS network for
GWAS
Populus
functional genomics
glycosyltransferase
high throughput
metabolite-gene validation
metabolomics
Journal
Frontiers in plant science
ISSN: 1664-462X
Titre abrégé: Front Plant Sci
Pays: Switzerland
ID NLM: 101568200
Informations de publication
Date de publication:
2023
2023
Historique:
received:
21
04
2023
accepted:
05
06
2023
medline:
7
8
2023
pubmed:
7
8
2023
entrez:
7
8
2023
Statut:
epublish
Résumé
Metabolite genome-wide association studies (mGWASs) are increasingly used to discover the genetic basis of target phenotypes in plants such as
Identifiants
pubmed: 37546246
doi: 10.3389/fpls.2023.1210146
pmc: PMC10402742
doi:
Types de publication
Journal Article
Langues
eng
Pagination
1210146Informations de copyright
Copyright © 2023 Saint-Vincent, Furches, Galanie, Teixeira Prates, Aldridge, Labbe, Zhao, Martin, Ranjan, Jones, Kainer, Kalluri, Chen, Muchero, Jacobson and Tschaplinski.
Déclaration de conflit d'intérêts
Author SG was employed by the Oak Ridge National Laboratory during the described research and is currently employed by the company Merck. The remaining authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
Références
J Chem Ecol. 2010 Mar;36(3):286-97
pubmed: 20177744
Plant Physiol. 2019 Aug;180(4):1784-1785
pubmed: 31366701
Front Plant Sci. 2016 May 26;7:735
pubmed: 27303427
Annu Rev Plant Biol. 2006;57:567-97
pubmed: 16669774
J Agric Food Chem. 2019 Feb 20;67(7):2012-2019
pubmed: 30678460
Plant J. 2012 Mar;69(6):1030-42
pubmed: 22077743
J Comput Chem. 2010 Jan 30;31(2):455-61
pubmed: 19499576
Nat Genet. 2021 Feb;53(2):243-253
pubmed: 33526925
Nucleic Acids Res. 2021 Jan 8;49(D1):D412-D419
pubmed: 33125078
Genes (Basel). 2022 Sep 13;13(9):
pubmed: 36140806
Science. 2007 Oct 5;318(5847):113-6
pubmed: 17916738
Front Plant Sci. 2020 Sep 09;11:545748
pubmed: 33013968
Plant Cell. 2018 Dec;30(12):3038-3057
pubmed: 30429223
Front Plant Sci. 2019 Oct 08;10:1249
pubmed: 31649710
Mol Plant. 2019 Jun 3;12(6):879-892
pubmed: 30639314
Plant Biotechnol J. 2020 Aug;18(8):1722-1735
pubmed: 31930656
PLoS Genet. 2016 Oct 19;12(10):e1006363
pubmed: 27760136
Science. 2006 Sep 1;313(5791):1291-4
pubmed: 16946071
Plant J. 2020 Apr;102(1):99-115
pubmed: 31736216
New Phytol. 2018 Oct;220(2):502-516
pubmed: 29992670
Nat Prod Rep. 2022 Feb 23;39(2):389-409
pubmed: 34486004
FEBS Lett. 2012 Nov 30;586(23):4082-7
pubmed: 23089177
J Biol Chem. 2001 Feb 9;276(6):4338-43
pubmed: 11042215
Plant Physiol. 2006 Mar;140(3):946-62
pubmed: 16415215
Nat Genet. 2012 Jun 17;44(7):821-4
pubmed: 22706312
Plant J. 2011 Apr;66(1):182-93
pubmed: 21443631
Nature. 2021 Aug;596(7873):583-589
pubmed: 34265844
BMC Plant Biol. 2014 Oct 07;14:265
pubmed: 25287590
J Mol Biol. 2009 Oct 9;392(5):1292-302
pubmed: 19683002
New Phytol. 2019 Jul;223(1):293-309
pubmed: 30843213
Nat Genet. 2010 Apr;42(4):348-54
pubmed: 20208533
Genome Res. 2003 Nov;13(11):2498-504
pubmed: 14597658
Trends Microbiol. 2007 May;15(5):219-32
pubmed: 17412593
Nature. 2007 Apr 26;446(7139):1008-16
pubmed: 17460661
Bioinformatics. 2016 May 1;32(9):1423-6
pubmed: 27153000
J Proteome Res. 2018 Apr 6;17(4):1361-1374
pubmed: 29464956
Genome Biol Evol. 2021 Sep 1;13(9):
pubmed: 34469536
Curr Opin Chem Biol. 2008 Oct;12(5):556-64
pubmed: 18678278
Biotechnol Biofuels. 2012 Sep 21;5(1):71
pubmed: 22998926
Bioinformatics. 2013 Nov 1;29(21):2722-8
pubmed: 23986568
Ann Bot. 2019 Oct 29;124(4):617-626
pubmed: 30689716
Nucleic Acids Res. 2012 Jan;40(Database issue):D1178-86
pubmed: 22110026
Plant J. 2019 Jan;97(1):91-100
pubmed: 30231195
J Chem Theory Comput. 2012 Jan 10;8(1):348-362
pubmed: 22368531
New Phytol. 2006;172(1):47-62
pubmed: 16945088
Front Plant Sci. 2022 Jun 14;13:921815
pubmed: 35774804
Curr Opin Biotechnol. 2021 Aug;70:174-186
pubmed: 34129999
Plant Cell. 2005 Nov;17(11):3141-54
pubmed: 16214900
J Chem Phys. 2007 Jan 7;126(1):014101
pubmed: 17212484
J Comput Chem. 2013 Sep 30;34(25):2135-45
pubmed: 23832629
Plant J. 2019 Dec;100(6):1273-1288
pubmed: 31446648