Efficient Formation of Single-copy Human Artificial Chromosomes.


Journal

bioRxiv : the preprint server for biology
Titre abrégé: bioRxiv
Pays: United States
ID NLM: 101680187

Informations de publication

Date de publication:
30 Jun 2023
Historique:
pubmed: 7 8 2023
medline: 7 8 2023
entrez: 7 8 2023
Statut: epublish

Résumé

Large DNA assembly methodologies underlie milestone achievements in synthetic prokaryotic and budding yeast chromosomes. While budding yeast control chromosome inheritance through ~125 bp DNA sequence-defined centromeres, mammals and many other eukaryotes use large, epigenetic centromeres. Harnessing centromere epigenetics permits human artificial chromosome (HAC) formation but is not sufficient to avoid rampant multimerization of the initial DNA molecule upon introduction to cells. Here, we describe an approach that efficiently forms single-copy HACs. It employs a ~750 kb construct that is sufficiently large to house the distinct chromatin types present at the inner and outer centromere, obviating the need to multimerize. Delivery to mammalian cells is streamlined by employing yeast spheroplast fusion. These developments permit faithful chromosome engineering in the context of metazoan cells.

Identifiants

pubmed: 37546784
doi: 10.1101/2023.06.30.547284
pmc: PMC10402137
pii:
doi:

Types de publication

Preprint

Langues

eng

Subventions

Organisme : NHGRI NIH HHS
ID : R01 HG012445
Pays : United States
Organisme : NIGMS NIH HHS
ID : R35 GM130302
Pays : United States

Déclaration de conflit d'intérêts

Competing Interests C.W.G., D.M.B., J.I.G., and B.E.B. are inventors on a provisional patent application submitted by UPenn related to this work.

Auteurs

Craig W Gambogi (CW)

Department of Biochemistry and Biophysics.
Graduate Program in Biochemistry and Molecular Biophysics.
Penn Center for Genome Integrity.
Epigenetics Institute Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, 19104 USA.

Elie Mer (E)

Department of Biochemistry and Biophysics.
Graduate Program in Biochemistry and Molecular Biophysics.
Penn Center for Genome Integrity.
Epigenetics Institute Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, 19104 USA.

David M Brown (DM)

J. Craig Venter Institute, La Jolla, CA 92037 USA.

George Yankson (G)

Wellcome Centre for Cell Biology, School of Biological Sciences, University of Edinburgh, Edinburgh EH9 3BF, UK.

Janardan N Gavade (JN)

Department of Biochemistry and Biophysics.
Penn Center for Genome Integrity.
Epigenetics Institute Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, 19104 USA.

Glennis A Logsdon (GA)

Department of Biochemistry and Biophysics.
Graduate Program in Biochemistry and Molecular Biophysics.
Penn Center for Genome Integrity.
Epigenetics Institute Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, 19104 USA.

Patrick Heun (P)

Wellcome Centre for Cell Biology, School of Biological Sciences, University of Edinburgh, Edinburgh EH9 3BF, UK.

John I Glass (JI)

J. Craig Venter Institute, La Jolla, CA 92037 USA.

Ben E Black (BE)

Department of Biochemistry and Biophysics.
Graduate Program in Biochemistry and Molecular Biophysics.
Penn Center for Genome Integrity.
Epigenetics Institute Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, 19104 USA.

Classifications MeSH