Polyphasic characterization of a novel hot-spring cyanobacterium
16S rRNA
16S-23 ITS
Albertania
CO2-concentrating mechanism
Leptolyngbyaceae
Oculatellaceae
Thermocoleostomius
Thermophilic cyanobacterium
Journal
Frontiers in microbiology
ISSN: 1664-302X
Titre abrégé: Front Microbiol
Pays: Switzerland
ID NLM: 101548977
Informations de publication
Date de publication:
2023
2023
Historique:
received:
28
02
2023
accepted:
06
07
2023
medline:
11
8
2023
pubmed:
11
8
2023
entrez:
11
8
2023
Statut:
epublish
Résumé
Thermophilic cyanobacteria play a crucial role as primary producers in hot spring ecosystems, yet their microbiological, taxonomic, and ecological characteristics are not extensively studied. This study aimed to characterize a novel strain of thermophilic cyanobacteria, PKUAC-SCTA174 (A174), using a combination of traditional polyphasic methods and modern genomic-based approaches. The study included 16S rRNA-based phylogeny, ITS secondary structure prediction, morphological and habitat analyses, as well as high-quality genome sequencing with corresponding phylogenomic analyses. The results of the 16S rRNA, 16S-23S ITS secondary structure, morphology, and habitat analyses supported the classification of the strain as a member of a novel genus within the family
Identifiants
pubmed: 37564287
doi: 10.3389/fmicb.2023.1176500
pmc: PMC10410155
doi:
Types de publication
Journal Article
Langues
eng
Pagination
1176500Informations de copyright
Copyright © 2023 Jiang, Tang, Liu and Daroch.
Déclaration de conflit d'intérêts
The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
Références
Front Microbiol. 2023 Apr 27;14:1111809
pubmed: 37180226
Front Microbiol. 2022 Mar 28;13:765105
pubmed: 35418964
Nat Biotechnol. 2019 May;37(5):540-546
pubmed: 30936562
Nucleic Acids Res. 2018 Jul 2;46(W1):W282-W288
pubmed: 29905870
Plant Physiol. 2016 Mar;170(3):1868-77
pubmed: 26792123
Environ Microbiol. 2007 Jan;9(1):26-38
pubmed: 17227409
Appl Environ Microbiol. 2009 Feb;75(3):608-17
pubmed: 19047394
Mol Phylogenet Evol. 2016 Dec;105:15-35
pubmed: 27546720
Front Microbiol. 2022 Jan 28;12:739625
pubmed: 35154020
Microbiol Resour Announc. 2022 Aug 18;11(8):e0029422
pubmed: 35876539
Bioresour Technol. 2019 Apr;278:255-265
pubmed: 30708328
ISME J. 2021 Jan;15(1):211-227
pubmed: 32943748
Appl Environ Microbiol. 1997 Apr;63(4):1367-74
pubmed: 9097433
Sci Rep. 2015 Feb 10;5:8365
pubmed: 25666585
Nat Commun. 2018 Nov 30;9(1):5114
pubmed: 30504855
Mol Biol Evol. 2013 Apr;30(4):772-80
pubmed: 23329690
Int J Mol Sci. 2019 Jan 03;20(1):
pubmed: 30609821
J Phycol. 2023 Feb;59(1):12-51
pubmed: 36443823
Sci Rep. 2019 Jan 24;9(1):694
pubmed: 30679537
Environ Microbiol. 2022 Jan;24(1):451-474
pubmed: 34837297
J Exp Bot. 2008;59(7):1441-61
pubmed: 17578868
Nucleic Acids Res. 1997 Mar 1;25(5):955-64
pubmed: 9023104
FEMS Microbiol Ecol. 2020 Mar 1;96(3):
pubmed: 31778156
J Phycol. 2021 Jun;57(3):886-902
pubmed: 33583028
Plant Physiol. 2003 May;132(1):218-29
pubmed: 12746527
Microbiology (Reading). 2000 Jun;146 ( Pt 6):1275-1286
pubmed: 10846207
Front Microbiol. 2017 Nov 14;8:2132
pubmed: 29184540
Bacteriol Rev. 1971 Jun;35(2):171-205
pubmed: 4998365
BMC Genomics. 2015 Sep 07;16:686
pubmed: 26346253
BMC Microbiol. 2018 Oct 17;18(1):134
pubmed: 30332987
Nucleic Acids Res. 2022 Jan 7;50(D1):D801-D807
pubmed: 34634793
Bioinformatics. 2012 Jun 15;28(12):1647-9
pubmed: 22543367
Curr Opin Microbiol. 2007 Oct;10(5):504-9
pubmed: 17923431
Nat Commun. 2019 Nov 6;10(1):5029
pubmed: 31695033
Syst Biol. 2012 May;61(3):539-42
pubmed: 22357727
Crit Rev Microbiol. 2018 Sep;44(5):541-560
pubmed: 29528259
Genome Res. 2003 Sep;13(9):2178-89
pubmed: 12952885
Mol Biol Evol. 2020 May 1;37(5):1530-1534
pubmed: 32011700
mSystems. 2022 Oct 26;7(5):e0031722
pubmed: 35980085
J Phycol. 2019 Oct;55(5):976-996
pubmed: 31233617
Mol Biol Evol. 2018 Feb 1;35(2):518-522
pubmed: 29077904
Front Microbiol. 2021 Sep 10;12:696102
pubmed: 34566907
J Phycol. 2023 Feb;59(1):9-11
pubmed: 36779556
Front Microbiol. 2022 May 06;13:876272
pubmed: 35602029
J Exp Bot. 2003 Feb;54(383):609-22
pubmed: 12554704
Bioresour Technol. 2019 Apr;278:424-434
pubmed: 30685131
Front Microbiol. 2020 Jan 31;11:82
pubmed: 32082292
Nucleic Acids Res. 2016 Jan 4;44(D1):D733-45
pubmed: 26553804
Front Genet. 2020 Nov 05;11:568223
pubmed: 33250920
Int J Syst Evol Microbiol. 2015 Jan;65(Pt 1):298-308
pubmed: 25351877
Curr Protoc Bioinformatics. 2014 Jun 17;46:12.6.1-12.6.25
pubmed: 24939127
Syst Biol. 2010 May;59(3):307-21
pubmed: 20525638