Epigenetic clocks and research implications of the lack of data on whom they have been developed: a review of reported and missing sociodemographic characteristics.

DNA methylation epigenetic age health equity socioeconomic

Journal

Environmental epigenetics
ISSN: 2058-5888
Titre abrégé: Environ Epigenet
Pays: England
ID NLM: 101675941

Informations de publication

Date de publication:
2023
Historique:
received: 20 02 2023
revised: 17 06 2023
accepted: 13 07 2023
medline: 11 8 2023
pubmed: 11 8 2023
entrez: 11 8 2023
Statut: epublish

Résumé

Epigenetic clocks are increasingly being used as a tool to assess the impact of a wide variety of phenotypes and exposures on healthy ageing, with a recent focus on social determinants of health. However, little attention has been paid to the sociodemographic characteristics of participants on whom these clocks have been based. Participant characteristics are important because sociodemographic and socioeconomic factors are known to be associated with both DNA methylation variation and healthy ageing. It is also well known that machine learning algorithms have the potential to exacerbate health inequities through the use of unrepresentative samples - prediction models may underperform in social groups that were poorly represented in the training data used to construct the model. To address this gap in the literature, we conducted a review of the sociodemographic characteristics of the participants whose data were used to construct 13 commonly used epigenetic clocks. We found that although some of the epigenetic clocks were created utilizing data provided by individuals from different ages, sexes/genders, and racialized groups, sociodemographic characteristics are generally poorly reported. Reported information is limited by inadequate conceptualization of the social dimensions and exposure implications of gender and racialized inequality, and socioeconomic data are infrequently reported. It is important for future work to ensure clear reporting of tangible data on the sociodemographic and socioeconomic characteristics of all the participants in the study to ensure that other researchers can make informed judgements about the appropriateness of the model for their study population.

Identifiants

pubmed: 37564905
doi: 10.1093/eep/dvad005
pii: dvad005
pmc: PMC10411856
doi:

Types de publication

Journal Article Review

Langues

eng

Pagination

dvad005

Subventions

Organisme : Medical Research Council
ID : MC_UU_00011/1
Pays : United Kingdom
Organisme : NIMHD NIH HHS
ID : R01 MD014304
Pays : United States

Informations de copyright

© The Author(s) 2023. Published by Oxford University Press.

Déclaration de conflit d'intérêts

The authors declare no conflict of interest.

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Auteurs

Sarah Holmes Watkins (SH)

Population Health Sciences, Bristol Medical School, University of Bristol, Bristol BS8 2BN, UK.
Integrative Epidemiology Unit, Population Health Sciences, Bristol Medical School, University of Bristol, Bristol BS8 2BN, UK.

Christian Testa (C)

Department of Social and Behavioral Sciences, Harvard T.H. Chan School of Public Health, Harvard University, Boston, MA 02115, USA.

Jarvis T Chen (JT)

Department of Social and Behavioral Sciences, Harvard T.H. Chan School of Public Health, Harvard University, Boston, MA 02115, USA.

Immaculata De Vivo (I)

Program in Genetic Epidemiology and Statistical Genetics, Department of Epidemiology, Harvard T.H. Chan School of Public Health, Boston, MA 02115, USA.
Department of Medicine, Harvard Medical School, Brigham and Women's Hospital, Boston, MA 02115, USA.

Andrew J Simpkin (AJ)

School of Medicine, National University of Ireland Galway, Galway H91 TK33, Ireland.

Kate Tilling (K)

Population Health Sciences, Bristol Medical School, University of Bristol, Bristol BS8 2BN, UK.
Integrative Epidemiology Unit, Population Health Sciences, Bristol Medical School, University of Bristol, Bristol BS8 2BN, UK.

Ana V Diez Roux (AV)

Department of Epidemiology and Biostatistics and Urban Health Collaborative, Dornsife School of Public Health, Drexel University, Philadelphia, PA 19104, USA.

George Davey Smith (G)

Population Health Sciences, Bristol Medical School, University of Bristol, Bristol BS8 2BN, UK.
Integrative Epidemiology Unit, Population Health Sciences, Bristol Medical School, University of Bristol, Bristol BS8 2BN, UK.

Pamela D Waterman (PD)

Department of Social and Behavioral Sciences, Harvard T.H. Chan School of Public Health, Harvard University, Boston, MA 02115, USA.

Matthew Suderman (M)

Population Health Sciences, Bristol Medical School, University of Bristol, Bristol BS8 2BN, UK.
Integrative Epidemiology Unit, Population Health Sciences, Bristol Medical School, University of Bristol, Bristol BS8 2BN, UK.

Caroline Relton (C)

Population Health Sciences, Bristol Medical School, University of Bristol, Bristol BS8 2BN, UK.
Integrative Epidemiology Unit, Population Health Sciences, Bristol Medical School, University of Bristol, Bristol BS8 2BN, UK.

Nancy Krieger (N)

Department of Social and Behavioral Sciences, Harvard T.H. Chan School of Public Health, Harvard University, Boston, MA 02115, USA.

Classifications MeSH