Defining cardiac functional recovery in end-stage heart failure at single-cell resolution.


Journal

Nature cardiovascular research
ISSN: 2731-0590
Titre abrégé: Nat Cardiovasc Res
Pays: England
ID NLM: 9918284280206676

Informations de publication

Date de publication:
Apr 2023
Historique:
medline: 16 8 2023
pubmed: 16 8 2023
entrez: 16 8 2023
Statut: ppublish

Résumé

Recovery of cardiac function is the holy grail of heart failure therapy yet is infrequently observed and remains poorly understood. In this study, we performed single-nucleus RNA sequencing from patients with heart failure who recovered left ventricular systolic function after left ventricular assist device implantation, patients who did not recover and non-diseased donors. We identified cell-specific transcriptional signatures of recovery, most prominently in macrophages and fibroblasts. Within these cell types, inflammatory signatures were negative predictors of recovery, and downregulation of RUNX1 was associated with recovery. In silico perturbation of RUNX1 in macrophages and fibroblasts recapitulated the transcriptional state of recovery. Cardiac recovery mediated by BET inhibition in mice led to decreased macrophage and fibroblast Runx1 expression and diminished chromatin accessibility within a Runx1 intronic peak and acquisition of human recovery signatures. These findings suggest that cardiac recovery is a unique biological state and identify RUNX1 as a possible therapeutic target to facilitate cardiac recovery.

Identifiants

pubmed: 37583573
doi: 10.1038/s44161-023-00260-8
pmc: PMC10426763
mid: NIHMS1915768
doi:

Types de publication

Journal Article

Langues

eng

Pagination

399-416

Subventions

Organisme : NIAMS NIH HHS
ID : P30 AR073752
Pays : United States
Organisme : NHLBI NIH HHS
ID : R01 HL135121
Pays : United States
Organisme : NHLBI NIH HHS
ID : R01 HL151078
Pays : United States
Organisme : NHLBI NIH HHS
ID : R01 HL139714
Pays : United States
Organisme : NHLBI NIH HHS
ID : R01 HL151924
Pays : United States
Organisme : NIDDK NIH HHS
ID : P30 DK052574
Pays : United States
Organisme : NHLBI NIH HHS
ID : R35 HL161185
Pays : United States
Organisme : NHLBI NIH HHS
ID : R01 HL156667
Pays : United States
Organisme : CSRD VA
ID : I01 CX002291
Pays : United States
Organisme : NCI NIH HHS
ID : P30 CA091842
Pays : United States
Organisme : NHLBI NIH HHS
ID : T32 HL125241
Pays : United States
Organisme : NHLBI NIH HHS
ID : R01 HL138466
Pays : United States
Organisme : NHLBI NIH HHS
ID : R01 HL132067
Pays : United States

Déclaration de conflit d'intérêts

Competing interests The authors declare no competing interests.

Références

Genome Biol. 2014;15(12):550
pubmed: 25516281
Circ Heart Fail. 2016 Jul;9(7):
pubmed: 27402861
J Clin Invest. 2017 Oct 2;127(10):3770-3783
pubmed: 28891814
Circ Res. 2019 Sep 13;125(7):662-677
pubmed: 31409188
J Am Heart Assoc. 2021 Aug 3;10(15):e019655
pubmed: 34315285
Development. 2020 Apr 27;147(8):
pubmed: 32341028
Circ Heart Fail. 2011 Jul;4(4):425-32
pubmed: 21540356
N Engl J Med. 2001 Nov 15;345(20):1435-43
pubmed: 11794191
Sci Adv. 2022 Apr;8(13):eabl9156
pubmed: 35363520
J Heart Lung Transplant. 2022 Oct;41(10):1324-1334
pubmed: 35835680
Nature. 2022 Aug;608(7921):174-180
pubmed: 35732739
Nat Genet. 2021 Mar;53(3):403-411
pubmed: 33633365
Circulation. 2020 Nov 24;142(21):2016-2028
pubmed: 33100036
Innovation (Camb). 2021 Jul 01;2(3):100141
pubmed: 34557778
Lancet. 2019 Jan 5;393(10166):61-73
pubmed: 30429050
Surg Clin North Am. 2004 Feb;84(1):223-42
pubmed: 15053191
Nature. 2021 Jan;589(7841):281-286
pubmed: 33176333
Eur J Heart Fail. 2021 Feb;23(2):335-338
pubmed: 33372410
Immunity. 2014 Jul 17;41(1):21-35
pubmed: 25035951
J Heart Lung Transplant. 2022 Oct;41(10):1309-1323
pubmed: 35965183
Nature. 2019 Sep;573(7774):430-433
pubmed: 31511695
Immunity. 2021 Sep 14;54(9):2057-2071.e6
pubmed: 34363749
Nat Biotechnol. 2019 Apr;37(4):451-460
pubmed: 30899105
Curr Heart Fail Rep. 2013 Dec;10(4):321-30
pubmed: 24014141
Blood. 2017 Apr 13;129(15):2070-2082
pubmed: 28179279
Circ Res. 2013 Aug 30;113(6):646-59
pubmed: 23989710
Nature. 2009 Feb 12;457(7231):887-91
pubmed: 19129762
Genome Biol. 2019 Dec 23;20(1):296
pubmed: 31870423
Ann Transl Med. 2020 Jul;8(13):827
pubmed: 32793672
Prog Biophys Mol Biol. 2008 Jun-Jul;97(2-3):479-96
pubmed: 18394685
Nature. 2008 Jul 24;454(7203):428-35
pubmed: 18650913
Open Heart. 2021 May;8(1):
pubmed: 33975872
Nat Methods. 2019 Dec;16(12):1289-1296
pubmed: 31740819
Genome Res. 2019 Aug;29(8):1363-1375
pubmed: 31340985
Circulation. 2014 Mar 11;129(10):1161-6
pubmed: 24615964
Eur Heart J. 2007 Mar;28(5):613-27
pubmed: 17132651
Circ Res. 2019 Jan 18;124(2):263-278
pubmed: 30582448
Circ Res. 2021 May 14;128(10):1594-1612
pubmed: 33983828
Proc Natl Acad Sci U S A. 2014 Nov 11;111(45):16029-34
pubmed: 25349429
Int J Nurs Stud. 2012 Jun;49(6):755-71
pubmed: 22197653
Science. 2022 May 13;376(6594):eabl4290
pubmed: 35549429
Cardiovasc Res. 2005 Dec 1;68(3):376-86
pubmed: 16024006
N Engl J Med. 2003 May 15;348(20):2007-18
pubmed: 12748317
Nat Biotechnol. 2018 Jun;36(5):411-420
pubmed: 29608179
Nat Cardiovasc Res. 2022 Mar;1(3):263-280
pubmed: 35959412
Circ Heart Fail. 2018 May;11(5):e004351
pubmed: 29716898
Science. 2021 May 7;372(6542):
pubmed: 33958447
Nature. 2021 Jul;595(7867):438-443
pubmed: 34163071
Nat Rev Genet. 2020 Oct;21(10):581-596
pubmed: 32839576
Science. 2022 Sep 2;377(6610):eabm4443
pubmed: 36048959
Nature. 2023 Feb;614(7949):742-751
pubmed: 36755098
Circulation. 2020 Aug 4;142(5):466-482
pubmed: 32403949
Nature. 2020 Dec;588(7838):466-472
pubmed: 32971526
Circulation. 2023 Jan 31;147(5):409-424
pubmed: 36448446
JACC Heart Fail. 2015 Sep;3(9):661-9
pubmed: 26362444
J Am Coll Cardiol. 2004 Aug 18;44(4):837-45
pubmed: 15312868
Nat Med. 2018 Aug;24(8):1234-1245
pubmed: 29892064
Nat Cell Biol. 2020 Jan;22(1):108-119
pubmed: 31915373
Circulation. 2012 Jul 10;126(2):230-41
pubmed: 22777666
Ann Thorac Surg. 2015 Jan;99(1):360-7
pubmed: 25442985
Sci Rep. 2018 Nov 7;8(1):16477
pubmed: 30405137
J Heart Lung Transplant. 2014 Apr;33(4):372-81
pubmed: 24582837
Nat Immunol. 2019 Jan;20(1):29-39
pubmed: 30538339
Circulation. 2014 Mar 4;129(9):1009-21
pubmed: 24429688
Immunity. 2021 Sep 14;54(9):2072-2088.e7
pubmed: 34320366
Nat Genet. 2022 Aug;54(8):1227-1237
pubmed: 35864193
J Mol Diagn. 2012 Jan;14(1):22-9
pubmed: 22166544
Curr Treat Options Cardiovasc Med. 2014 Mar;16(3):287
pubmed: 24492922
Circ Res. 2019 May 24;124(11):1658-1678
pubmed: 31120817
Nat Commun. 2022 Feb 15;13(1):882
pubmed: 35169146

Auteurs

Junedh M Amrute (JM)

Cardiovascular Division, Department of Medicine, Washington University School of Medicine, St. Louis, MO, USA.
These authors contributed equally: Junedh M. Amrute, Lulu Lai.

Lulu Lai (L)

Department of Pathology and Immunology, Washington University School of Medicine, St. Louis, MO, USA.
These authors contributed equally: Junedh M. Amrute, Lulu Lai.

Pan Ma (P)

Cardiovascular Division, Department of Medicine, Washington University School of Medicine, St. Louis, MO, USA.

Andrew L Koenig (AL)

Cardiovascular Division, Department of Medicine, Washington University School of Medicine, St. Louis, MO, USA.

Kenji Kamimoto (K)

Department of Developmental Biology, Washington University School of Medicine, St. Louis, MO, USA.
Department of Genetics, Washington University School of Medicine, St. Louis, MO, USA.
Center for Regenerative Medicine, Washington University School of Medicine, St. Louis, MO, USA.

Andrea Bredemeyer (A)

Cardiovascular Division, Department of Medicine, Washington University School of Medicine, St. Louis, MO, USA.

Thirupura S Shankar (TS)

Division of Cardiovascular Medicine & Nora Eccles Harrison Cardiovascular Research and Training Institute, University of Utah Health & School of Medicine, Salt Lake City, UT, USA.

Christoph Kuppe (C)

Institute of Experimental Medicine and Systems Biology and Division of Nephrology, RWTH Aachen University, Aachen, Germany.

Farid F Kadyrov (FF)

Cardiovascular Division, Department of Medicine, Washington University School of Medicine, St. Louis, MO, USA.

Linda J Schulte (LJ)

Division of Cardiothoracic Surgery, Department of Surgery, Washington University School of Medicine, St. Louis, MO, USA.

Dylan Stoutenburg (D)

Cardiovascular Division, Department of Medicine, Washington University School of Medicine, St. Louis, MO, USA.

Benjamin J Kopecky (BJ)

Cardiovascular Division, Department of Medicine, Washington University School of Medicine, St. Louis, MO, USA.

Sutip Navankasattusas (S)

Division of Cardiovascular Medicine & Nora Eccles Harrison Cardiovascular Research and Training Institute, University of Utah Health & School of Medicine, Salt Lake City, UT, USA.

Joseph Visker (J)

Division of Cardiovascular Medicine & Nora Eccles Harrison Cardiovascular Research and Training Institute, University of Utah Health & School of Medicine, Salt Lake City, UT, USA.

Samantha A Morris (SA)

Department of Developmental Biology, Washington University School of Medicine, St. Louis, MO, USA.
Department of Genetics, Washington University School of Medicine, St. Louis, MO, USA.
Center for Regenerative Medicine, Washington University School of Medicine, St. Louis, MO, USA.

Rafael Kramann (R)

Institute of Experimental Medicine and Systems Biology and Division of Nephrology, RWTH Aachen University, Aachen, Germany.
Department of Internal Medicine, Erasmus Medical Center, Rotterdam, the Netherlands.

Florian Leuschner (F)

Department of Cardiology, University Hospital Heidelberg, Heidelberg, Germany.
German Centre for Cardiovascular Research (DZHK), Partner Site Heidelberg, Heidelberg, Germany.

Douglas L Mann (DL)

Cardiovascular Division, Department of Medicine, Washington University School of Medicine, St. Louis, MO, USA.

Stavros G Drakos (SG)

Division of Cardiovascular Medicine & Nora Eccles Harrison Cardiovascular Research and Training Institute, University of Utah Health & School of Medicine, Salt Lake City, UT, USA.

Kory J Lavine (KJ)

Cardiovascular Division, Department of Medicine, Washington University School of Medicine, St. Louis, MO, USA.
Department of Pathology and Immunology, Washington University School of Medicine, St. Louis, MO, USA.
Department of Developmental Biology, Washington University School of Medicine, St. Louis, MO, USA.
Center for Regenerative Medicine, Washington University School of Medicine, St. Louis, MO, USA.

Classifications MeSH