cyjShiny: A cytoscape.js R Shiny Widget for network visualization and analysis.

Software Libraries

Journal

PloS one
ISSN: 1932-6203
Titre abrégé: PLoS One
Pays: United States
ID NLM: 101285081

Informations de publication

Date de publication:
2023
Historique:
received: 29 08 2022
accepted: 17 04 2023
medline: 18 8 2023
pubmed: 16 8 2023
entrez: 16 8 2023
Statut: epublish

Résumé

cyjShiny is an open-source R package that allows users to embed network visualization into Shiny apps and R Markdown documents. cyjShiny (https://github.com/cytoscape/cyjShiny) builds on the cytoscape.js Javascript graph library. Additionally, the package provides helper functions to convert common R data representations (e.g., data.frame) into forms compatible with cytoscape.js.

Identifiants

DOI: 10.1371/journal.pone.0285339 PMID: 37585474 PMC: PMC10431631
pubmed: 37585474
doi: 10.1371/journal.pone.0285339
pii: PONE-D-22-24150
pmc: PMC10431631
doi:

Types de publication

Journal Article Research Support, Non-U.S. Gov't Research Support, N.I.H., Extramural

Langues

eng

Sous-ensembles de citation

IM

Pagination

e0285339

Subventions

Organisme : NIGMS NIH HHS
ID : P41 GM103504
Pays : United States

Informations de copyright

Copyright: © 2023 Luna et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

Déclaration de conflit d'intérêts

The authors have declared that no competing interests exist.

Références

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pubmed: 33783656
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pubmed: 34761267
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pubmed: 14597658
Plant Cell Physiol. 2022 Jun 15;63(6):869-881
pubmed: 35353884
Database (Oxford). 2019 Jan 1;2019:
pubmed: 31836896
Genes (Basel). 2021 May 20;12(5):
pubmed: 34065373
Nucleic Acids Res. 2016 Jul 8;44(W1):W83-9
pubmed: 27098042
Bioinformatics. 2016 Jan 15;32(2):309-11
pubmed: 26415722
Nucleic Acids Res. 2021 Jan 8;49(D1):D988-D997
pubmed: 33219670
Nucleic Acids Res. 2020 Jan 8;48(D1):D489-D497
pubmed: 31647099
Nucleic Acids Res. 2021 Jan 8;49(D1):D899-D907
pubmed: 33219682
Nucleic Acids Res. 2019 Jul 2;47(W1):W199-W205
pubmed: 31114916

Auteurs

Augustin Luna (A)

Department of Systems Biology, Harvard Medical School, Boston, MA, United States of America.
Broad Institute of Harvard and MIT, Cambridge, MA, United States of America.
ORCID: 0000-0001-5709-371X

Omar Shah (O)

Red Kubes, Utrecht, Netherlands.

Chris Sander (C)

Department of Systems Biology, Harvard Medical School, Boston, MA, United States of America.
Broad Institute of Harvard and MIT, Cambridge, MA, United States of America.

Paul Shannon (P)

Institute for Systems Biology, Seattle, Washington, United States of America.

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Classifications MeSH

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