The Brain Tumor Segmentation (BraTS) Challenge 2023:

BraTS MRI brain challenge image synthesis machine learning segmentation tumor

Journal

ArXiv
ISSN: 2331-8422
Titre abrégé: ArXiv
Pays: United States
ID NLM: 101759493

Informations de publication

Date de publication:
28 Jun 2023
Historique:
pubmed: 23 8 2023
medline: 23 8 2023
entrez: 23 8 2023
Statut: epublish

Résumé

Automated brain tumor segmentation methods have become well-established and reached performance levels offering clear clinical utility. These methods typically rely on four input magnetic resonance imaging (MRI) modalities: T1-weighted images with and without contrast enhancement, T2-weighted images, and FLAIR images. However, some sequences are often missing in clinical practice due to time constraints or image artifacts, such as patient motion. Consequently, the ability to substitute missing modalities and gain segmentation performance is highly desirable and necessary for the broader adoption of these algorithms in the clinical routine. In this work, we present the establishment of the Brain MR Image Synthesis Benchmark (BraSyn) in conjunction with the Medical Image Computing and Computer-Assisted Intervention (MICCAI) 2023. The primary objective of this challenge is to evaluate image synthesis methods that can realistically generate missing MRI modalities when multiple available images are provided. The ultimate aim is to facilitate automated brain tumor segmentation pipelines. The image dataset used in the benchmark is diverse and multi-modal, created through collaboration with various hospitals and research institutions.

Identifiants

pubmed: 37608932
pii: 2305.09011
pmc: PMC10441440
pii:

Types de publication

Preprint

Langues

eng

Subventions

Organisme : NCI NIH HHS
ID : U01 CA242871
Pays : United States

Auteurs

Hongwei Bran Li (HB)

University of Zurich, Switzerland.
Department of Informatics, Technical University Munich, Germany.
Klinikum rechts der Isar, Technical University of Munich, Germany.

Gian Marco Conte (GM)

Mayo Clinic, Rochester, USA.

Syed Muhammad Anwar (SM)

Children's National Hospital, Washington DC, USA.
George Washington University, Washington DC, USA.

Florian Kofler (F)

Helmholtz AI, Helmholtz Munich, Germany.
Department of Informatics, Technical University Munich, Germany.
TranslaTUM - Central Institute for Translational Cancer Research, Technical University of Munich, Germany.
Department of Diagnostic and Interventional Neuroradiology, School of Medicine, Klinikum rechts der Isar, Technical University of Munich, Germany.

Ivan Ezhov (I)

Department of Informatics, Technical University Munich, Germany.

Koen van Leemput (K)

Finnish Center for Artificial Intelligence, Finland.

Marie Piraud (M)

Helmholtz AI, Helmholtz Munich, Germany.

Maria Diaz (M)

Sage Bionetworks, USA.

Byrone Cole (B)

Sage Bionetworks, USA.

Evan Calabrese (E)

Duke University Medical Center, Department of Radiology, USA.
University of California San Francisco, CA, USA.

Jeff Rudie (J)

University of California San Francisco, CA, USA.

Felix Meissen (F)

Department of Informatics, Technical University Munich, Germany.

Maruf Adewole (M)

Medical Artificial Intelligence (MAI) Lab, Crestview Radiology, Lagos, Nigeria.

Anastasia Janas (A)

Yale University, New Haven, CT, USA.

Anahita Fathi Kazerooni (AF)

Children's Hospital of Philadelphia, University of Pennsylvania, Philadelphia, PA, USA.
Center for AI and Data Science for Integrated Diagnostics (AI2D) I& Center for Biomedical Image Computing and Analytics (CBICA), University of Pennsylvania, Philadelphia, PA, USA.

Dominic LaBella (D)

Duke University Medical Center, Department of Radiation Oncology, USA.

Ahmed W Moawad (AW)

Mercy Catholic Medical Center, Darby, PA, USA.

Keyvan Farahani (K)

Cancer Imaging Program, National Cancer Institute, National Institutes of Health, Bethesda, MD 20814, USA.

James Eddy (J)

Sage Bionetworks, USA.

Timothy Bergquist (T)

Sage Bionetworks, USA.

Verena Chung (V)

Sage Bionetworks, USA.

Russell Takeshi Shinohara (RT)

Center for AI and Data Science for Integrated Diagnostics (AI2D) I& Center for Biomedical Image Computing and Analytics (CBICA), University of Pennsylvania, Philadelphia, PA, USA.
Center for Clinical Epidemiology and Biostatistics, University of Pennsylvania, Philadelphia, USA.

Farouk Dako (F)

Center for Global Health, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA.

Walter Wiggins (W)

Duke University Medical Center, Department of Radiology, USA.

Zachary Reitman (Z)

Duke University Medical Center, Department of Radiation Oncology, USA.

Chunhao Wang (C)

Duke University Medical Center, Department of Radiation Oncology, USA.

Xinyang Liu (X)

Children's National Hospital, Washington DC, USA.
George Washington University, Washington DC, USA.

Zhifan Jiang (Z)

Children's National Hospital, Washington DC, USA.
George Washington University, Washington DC, USA.

Ariana Familiar (A)

Children's Hospital of Philadelphia, University of Pennsylvania, Philadelphia, PA, USA.

Elaine Johanson (E)

PrecisionFDA, U.S. Food and Drug Administration, Silver Spring, MD, USA.

Zeke Meier (Z)

Booz Allen Hamilton, McLean, VA, USA.

Christos Davatzikos (C)

Center for AI and Data Science for Integrated Diagnostics (AI2D) I& Center for Biomedical Image Computing and Analytics (CBICA), University of Pennsylvania, Philadelphia, PA, USA.
Department of Radiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.

John Freymann (J)

Leidos Biomedical Research, Inc., Frederick National Laboratory for Cancer Research, Frederick, MD 21701, USA.
Cancer Imaging Program, National Cancer Institute, National Institutes of Health, Bethesda, MD 20814, USA.

Justin Kirby (J)

Leidos Biomedical Research, Inc., Frederick National Laboratory for Cancer Research, Frederick, MD 21701, USA.
Cancer Imaging Program, National Cancer Institute, National Institutes of Health, Bethesda, MD 20814, USA.

Michel Bilello (M)

Center for AI and Data Science for Integrated Diagnostics (AI2D) I& Center for Biomedical Image Computing and Analytics (CBICA), University of Pennsylvania, Philadelphia, PA, USA.
Department of Radiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.

Hassan M Fathallah-Shaykh (HM)

Department of Neurology, The University of Alabama at Birmingham, Birmingham, AL, USA.

Roland Wiest (R)

Institute for Surgical Technology and Biomechanics, University of Bern, Bern, Switzerland.
Support Centre for Advanced Neuroimaging Inselspital, Institute for Diagnostic and Interventional Neuroradiology, Bern University Hospital, Bern, Switzerland.

Jan Kirschke (J)

Department of Neuroradiology, Technical University of Munich, Munich, Germany.

Rivka R Colen (RR)

University of Pittsburgh Medical Center, PA, USA.
Department of Diagnostic Radiology, University of Texas MD Anderson Cancer Center, Houston, TX, USA.

Aikaterini Kotrotsou (A)

Department of Diagnostic Radiology, University of Texas MD Anderson Cancer Center, Houston, TX, USA.

Pamela Lamontagne (P)

Department of Psychology, Washington University, St. Louis, MO, USA.

Daniel Marcus (D)

Neuroimaging Informatics and Analysis Center, Washington University, St. Louis, MO, USA.
Department of Radiology, Washington University, St. Louis, MO, USA.

Mikhail Milchenko (M)

Neuroimaging Informatics and Analysis Center, Washington University, St. Louis, MO, USA.
Department of Radiology, Washington University, St. Louis, MO, USA.

Arash Nazeri (A)

Department of Radiology, Washington University, St. Louis, MO, USA.

Marc-André Weber (MA)

Institute of Diagnostic and Interventional Radiology, Pediatric Radiology and Neuroradiology, University Medical Center Rostock, Ernst-Heydemann-Str. 6, 18057 Rostock, Germany.

Abhishek Mahajan (A)

Tata Memorial Centre, Homi Bhabha National Institute, Mumbai, India.

Suyash Mohan (S)

Center for AI and Data Science for Integrated Diagnostics (AI2D) I& Center for Biomedical Image Computing and Analytics (CBICA), University of Pennsylvania, Philadelphia, PA, USA.
Department of Radiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.

John Mongan (J)

University of California San Francisco, CA, USA.

Christopher Hess (C)

University of California San Francisco, CA, USA.

Soonmee Cha (S)

University of California San Francisco, CA, USA.

Javier Villanueva-Meyer (J)

University of California San Francisco, CA, USA.

Errol Colak (E)

University of Toronto, Toronto, ON, Canada.

Priscila Crivellaro (P)

University of Toronto, Toronto, ON, Canada.

Andras Jakab (A)

University of Debrecen, Hungary.

Jake Albrecht (J)

Sage Bionetworks, USA.

Udunna Anazodo (U)

Montreal Neurological Institute (MNI), McGill University, Montreal, QC, Canada.

Mariam Aboian (M)

Yale University, New Haven, CT, USA.

Thomas Yu (T)

Athinoula A. Martinos Center for Biomedical Imaging, Harvard Medical School, USA.

Verena Chung (V)

Sage Bionetworks, USA.

Timothy Bergquist (T)

Sage Bionetworks, USA.

James Eddy (J)

Sage Bionetworks, USA.

Jake Albrecht (J)

Sage Bionetworks, USA.

Ujjwal Baid (U)

Center for AI and Data Science for Integrated Diagnostics (AI2D) I& Center for Biomedical Image Computing and Analytics (CBICA), University of Pennsylvania, Philadelphia, PA, USA.
Department of Radiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Department of Pathology and Laboratory Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.

Spyridon Bakas (S)

Center for AI and Data Science for Integrated Diagnostics (AI2D) I& Center for Biomedical Image Computing and Analytics (CBICA), University of Pennsylvania, Philadelphia, PA, USA.
Department of Radiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Department of Pathology and Laboratory Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.

Marius George Linguraru (MG)

Children's National Hospital, Washington DC, USA and George Washington University, USA.

Bjoern Menze (B)

University of Zurich, Switzerland.

Juan Eugenio Iglesias (JE)

Athinoula A. Martinos Center for Biomedical Imaging, Harvard Medical School, USA.

Benedikt Wiestler (B)

Klinikum rechts der Isar, Technical University of Munich, Germany.

Classifications MeSH