An integrative approach to assess the impact of disturbance on native fish in lakes.

Indigenous Knowledge anthropogenic disturbances environmental DNA fish population surveys freshwater mesocosms paleolimnology social histories stressor

Journal

Biological reviews of the Cambridge Philosophical Society
ISSN: 1469-185X
Titre abrégé: Biol Rev Camb Philos Soc
Pays: England
ID NLM: 0414576

Informations de publication

Date de publication:
24 Aug 2023
Historique:
revised: 10 08 2023
received: 16 03 2023
accepted: 14 08 2023
medline: 25 8 2023
pubmed: 25 8 2023
entrez: 25 8 2023
Statut: aheadofprint

Résumé

Freshwater fish are in a perilous state with more than 30% of species considered critically endangered. Yet significant ecological and methodological complexities constrain our ability to determine how disturbances are impacting native fish communities. We review current methods used to assess the responses of fish communities, especially native fish, to disturbances, with a focus on lakes. These methods include contemporary population surveys, manipulative experimental approaches, paleolimnological approaches and Indigenous Knowledge and social histories. We identify knowledge gaps, such as a lack of baseline data for native fish, an inability to assess the impact of historical disturbances, stressor response dynamics in contemporary multi-stressor environments, and natural disturbance regimes. Our assessment of the current methods highlights challenges to filling these knowledge gaps using the reviewed methods. We advocate strongly for the implementation of an integrative approach that combines emerging technologies (i.e. molecular-based techniques in contemporary surveys and paleolimnology) and underutilised knowledge streams (i.e. Indigenous Knowledge and social histories) which should be used in concert with conventional methods. This integrative approach will allow researchers to determine the key drivers of decline and the degree of change, which will enable more informed and successful management actions.

Identifiants

pubmed: 37621123
doi: 10.1111/brv.13013
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Subventions

Organisme : New Zealand Ministry of Business, Innovation and Employment
ID : C05X1707
Organisme : Victoria University of Wellington

Informations de copyright

© 2023 Cambridge Philosophical Society.

Références

Abell, J. M., Özkundakci, D., Hamilton, D. P. & Miller, S. D. (2011). Relationships between land use and nitrogen and phosphorus in New Zealand lakes. Marine and Freshwater Research 62(2), 162-175.
Achleitner, D., Gassner, H. & Luger, M. (2012). Comparison of three standardised fish sampling methods in 14 alpine lakes in Austria. Fisheries Management and Ecology 19(4), 352-361.
Alin, S. R., Cohen, A. S., Bills, R., Gashagaza, M. M., Michel, E., Tiercelin, J.-J., Martens, K., Coveliers, P., Mboko, S. K., West, K., Soreghan, M., Kimbadi, S. & Ntakimazi, G. (1999). Effects of landscape disturbance on animal communities in Lake Tanganyika, East Africa. Conservation Biology 13(5), 1017-1033.
Allan, J. D., Abell, R., Hogan, Z., Revenga, C., Taylor, B. W., Welcomme, R. L. & Winemiller, K. (2005). Overfishing of inland waters. BioScience 55(12), 1041-1051.
Almeida, D. & Grossman, G. D. (2012). Utility of direct observational methods for assessing competitive interactions between non-native and native freshwater fishes. Fisheries Management and Ecology 19(2), 157-166.
Alric, B., Jenny, J.-P., Berthon, V., Arnaud, F., Pignol, C., Reyss, J.-L., Sabatier, P. & Perga, M.-E. (2013). Local forcings affect lake zooplankton vulnerability and response to climate warming. Ecology 94(12), 2767-2780.
Amsinck, S. L., Jeppesen, E. & Landkildehus, F. (2005). Inference of past changes in zooplankton community structure and planktivorous fish abundance from sedimentary subfossils - a study of a coastal lake subjected to major fish kill incidents during the past century. Archiv für Hydrobiologie 162(3), 363-382.
Amundsen, P.-A., Primicerio, R., Smalås, A., Henriksen, E. H., Knudsen, R., Kristoffersen, R. & Klemetsen, A. (2019). Long-term ecological studies in northern lakes-challenges, experiences, and accomplishments. Limnology and Oceanography 64(S1), S11-S21.
Arthington, A. H., Dulvy, N. K., Gladstone, W. & Winfield, I. J. (2016). Fish conservation in freshwater and marine realms: status, threats and management. Aquatic Conservation: Marine and Freshwater Ecosystems 26(5), 838-857.
Axenrot, T., Degerman, E. & Asp, A. (2023). Seasonal variation in thermal habitat volume for cold-water fish populations: implications for hydroacoustic survey design and stock assessment. Aqua Reports 2023, 7.
Azuma, M. (2001). Ecological disturbance by two alien fish species to the indigenous community of a small lake in western Japan. SIL Proceedings 27(7), 3794-3797.
Barouillet, C., Monchamp, M.-E., Bertilsson, S., Brasell, K., Domaizon, I., Epp, L. S., Ibrahim, A., Mejbel, H., Nwosu, E. C., Pearman, J. K., Picard, M., Thomson-Laing, G., Tsugeki, N., Von Eggers, J., Gregory-Eaves, I., et al. (2022). Investigating the effects of anthropogenic stressors on lake biota using sedimentary DNA. Freshwater Biology, 1-19.
Bašić, T., Copp, G. H., Edmonds-Brown, V. R., Keskin, E., Davison, P. I. & Britton, J. R. (2019). Trophic consequences of an invasive, small-bodied non-native fish, sunbleak Leucaspius delineatus, for native pond fishes. Biological Invasions 21(1), 261-275.
Becker, L. J. S., Brooks, E. M. & Gabor, C. R. (2016). Effects of turbidity on foraging behavior in the endangered fountain darter (Etheostoma fonticola). The American Midland Naturalist 175(1), 55-63.
Beeton, A. M. (2002). Large freshwater lakes: present state, trends, and future. Environmental Conservation 29(1), 21-38.
Beng, K. C. & Corlett, R. T. (2020). Applications of environmental DNA (eDNA) in ecology and conservation: opportunities, challenges and prospects. Biodiversity and Conservation 29(7), 2089-2121.
Bennion, H., Davidson, T. A., Sayer, C. D., Simpson, G. L., Rose, N. L. & Sadler, J. P. (2015). Harnessing the potential of the multi-indicator palaeoecological approach: an assessment of the nature and causes of ecological change in a eutrophic shallow lake. Freshwater Biology 60(7), 1423-1442.
Berkes, F. (2017). Sacred Ecology, Fourth Edition. Routledge, New York.
Bíró, P. (2000). Long-term changes in Lake Balaton and its fish populations. Advances in Ecological Research 31, 599-613.
Blanco, S., Romo, S. & Villena, M.-J. (2004). Experimental study on the diet of mosquitofish (Gambusia holbrooki) under different ecological conditions in a shallow lake. International Review of Hydrobiology 89(3), 250-262.
Borcherding, J., Heubel, K. & Storm, S. (2019). Competition fluctuates across years and seasons in a 6-species-fish community: empirical evidence from the field. Reviews in Fish Biology and Fisheries 29(3), 589-604.
Bounas, A., Catsadorakis, G., Koutseri, I., Nikolaou, H., Nicolas, D., Malakou, M. & Crivelli, A. J. (2021). Temporal trends and determinants of fish biomass in two contrasting natural lake systems: insights from a spring long-term monitoring scheme. Knowledge & Management of Aquatic Ecosystems 422, 28.
Brancelj, A., Sisko, M., Brancelj, I. R., Jeran, Z. & Jacimovic, R. (2000). Effects of land use and fish stocking on a mountain lake-evidence from the sediment. Periodicum Biologorum 102(3), 259-268.
Brazner, J. C., Danz, N. P., Niemi, G. J., Regal, R. R., Trebitz, A. S., Howe, R. W., Hanowski, J. M., Johnson, L. B., Ciborowski, J. J. H., Johnston, C. A., Reavie, E. D., Brady, V. J. & Sgro, G. V. (2007). Evaluation of geographic, geomorphic and human influences on Great Lakes wetland indicators: a multi-assemblage approach. Ecological Indicators 7(3), 610-635.
Briones, J. C., Tsai, C.-H., Nakazawa, T., Sakai, Y., Papa, R. D. S., Hsieh, C.-H. & Okuda, N. (2012). Long-term changes in the diet of Gymnogobius isaza from Lake Biwa, Japan: effects of body size and environmental prey availability. PLoS One 7(12), e53167.
Britton, J. R. (2018). Empirical predictions of the trophic consequences of non-native freshwater fishes: a synthesis of approaches and invasion impacts. Turkish Journal of Fisheries and Aquatic Sciences 19(6), 529-539.
Brousseau, C., Randall, R. & Clark, M. (2005). Protocol for boat electrofishing in nearshore areas of the lower Great Lakes: transect and point survey methods for collecting fish and habitat data, 1988 to 2002. Canadian Manuscript Report of Fisheries and Aquatic Sciences 2702, 1-94.
Brucet, S., Pédron, S., Mehner, T., Lauridsen, T. L., Argillier, C., Winfield, I. J., Volta, P., Emmrich, M., Hesthagen, T., Holmgren, K., Benejam, L., Kelly, F., Krause, T., Palm, A., Rask, M. & Jeppesen, E. (2013). Fish diversity in European lakes: geographical factors dominate over anthropogenic pressures. Freshwater Biology 58(9), 1779-1793.
Buchaca, T., Skov, T., Amsinck, S. L., Gonçalves, V., Azevedo, J. M. N., Andersen, T. J. & Jeppesen, E. (2011). Rapid ecological shift following piscivorous fish introduction to increasingly eutrophic and warmer Lake Furnas (Azores archipelago, Portugal): a paleoecological approach. Ecosystems 14(3), 458-477.
Burks, R. L., Mulderij, G., Gross, E., Jones, I., Jacobsen, L., Jeppesen, E. & Van Donk, E. (2006). Center stage: the crucial role of macrophytes in regulating trophic interactions in shallow lake wetlands. In Wetlands: Functioning, Biodiversity Conservation, and Restoration (eds R. Bobbink, B. Beltman, J. T. A. Verhoeven and D. F. Whigham), pp. 37-59. Springer, Berlin, Heidelberg.
Cantonati, M., Zorza, R., Bertoli, M., Pastorino, P., Salvi, G., Platania, G., Prearo, M. & Pizzul, E. (2021). Recent and subfossil diatom assemblages as indicators of environmental change (including fish introduction) in a high-mountain lake. Ecological Indicators 125, 107603.
Capo, E., Giguet-Covex, C., Rouillard, A., Nota, K., Heintzman, P. D., Vuillemin, A., Ariztegui, D., Arnaud, F., Belle, S., Bertilsson, S., Bigler, C., Bindler, R., Brown, A. G., Clarke, C. L., Crump, S. E., et al. (2021). Lake sedimentary DNA research on past terrestrial and aquatic biodiversity: overview and recommendations. Quaternary 4(1), 6.
Capo, E., Spong, G., Norman, S., Königsson, H., Bartels, P. & Byström, P. (2019). Droplet digital PCR assays for the quantification of brown trout (Salmo trutta) and Arctic char (Salvelinus alpinus) from environmental DNA collected in the water of mountain lakes. PLoS One 14(12), e0226638.
Carey, M. P. & Wahl, D. H. (2010). Native fish diversity alters the effects of an invasive species on food webs. Ecology 91(10), 2965-2974.
Carreon-Martinez, L. & Heath, D. D. (2010). Revolution in food web analysis and trophic ecology: diet analysis by DNA and stable isotope analysis. Molecular Ecology 19(1), 25-27.
Cazzolla Gatti, R. (2016). Freshwater biodiversity: a review of local and global threats. International Journal of Environmental Studies 73(6), 887-904.
Chen, J., Liu, Z., Xiao, S., Chen, R., Luo, C., Zhu, T., Cao, T., Ni, L., Xie, P., Su, H. & Zhang, M. (2020). Effects of benthivorous fish disturbance on chlorophyll a contents in water and the growth of two submersed macrophytes with different growth forms under two light regimes. Science of the Total Environment 704, 135269.
Chong, V. C., Lee, P. K. Y. & Lau, C. M. (2010). Diversity, extinction risk and conservation of Malaysian fishes. Journal of Fish Biology 76(9), 2009-2066.
Chraïbi, V. L. S. & Fritz, S. C. (2020). Assessing the hierarchy of long-term environmental controls on diatom communities of Yellowstone National Park using lacustrine sediment records. Lake and Reservoir Management 36(3), 278-296.
Chu, C., Mandrak, N. E. & Minns, C. K. (2005). Potential impacts of climate change on the distributions of several common and rare freshwater fishes in Canada. Diversity and Distributions 11(4), 299-310.
Closs, G. P., Krkosek, M. & Olden, J. D. (2016). Conservation of Freshwater Fishes. Cambridge University Press, Cambridge.
Cohen, A. S. (2003). Paleolimnology: The History and Evolution of Lake Systems. Oxford University Press, New York.
Cohen, A. S., Gergurich, E. L., Kraemer, B. M., Mcglue, M. M., Mcintyre, P. B., Russell, J. M., Simmons, J. D. & Swarzenski, P. W. (2016). Climate warming reduces fish production and benthic habitat in Lake Tanganyika, one of the most biodiverse freshwater ecosystems. Proceedings of the National Academy of Sciences 113(34), 9563.
Coll, C., Morais, L. T. D., Laë, R., Lebourges-Dhaussy, A., Simier, M., Guillard, J., Josse, E., Ecoutin, J.-M., Albaret, J.-J., Raffray, J. & Kantoussan, J. (2007). Use and limits of three methods for assessing fish size spectra and fish abundance in two tropical man-made lakes. Fisheries Research 83(2), 306-318.
Cook, B. I., Mankin, J. S. & Anchukaitis, K. J. (2018). Climate change and drought: from past to future. Current Climate Change Reports 4(2), 164-179.
Copp, G. H., Britton, J. R., Guo, Z., Ronni Edmonds-Brown, V., Pegg, J., Vilizzi, L. & Davison, P. I. (2017). Trophic consequences of non-native pumpkinseed Lepomis gibbosus for native pond fishes. Biological Invasions 19(1), 25-41.
Crivelli, A. J. (1990). Fisheries decline in the freshwater lakes of northern Greece with special attention for Lake Mikri Prespa. Management of Freshwater Fisheries 31, 230-247.
Crivelli, A. J. (1995). Are fish introductions a threat to endemic freshwater fishes in the northern Mediterranean region? Biological Conservation 72(2), 311-319.
Crowl, T. A., Townsend, C. R. & McIntosh, A. R. (1992). The impact of introduced brown and rainbow trout on native fish: the case of Australasia. Reviews in Fish Biology and Fisheries 2(3), 217-241.
Cucherousset, J., Bouletreau, S., Martino, A., Roussel, J. M. & Santoul, F. (2012). Using stable isotope analyses to determine the ecological effects of non-native fishes. Fisheries Management and Ecology 19(2), 111-119.
da Silveira, E. L., Semmar, N., Cartes, J. E., Tuset, V. M., Lombarte, A., Ballester, E. L. C. & Vaz-Dos-Santos, A. M. (2020). Methods for trophic ecology assessment in fishes: a critical review of stomach analyses. Reviews in Fisheries Science & Aquaculture 28(1), 71-106.
Davidson, T. A., Sayer, C. D., Bennion, H., David, C., Rose, N. & Wade, M. P. (2005). A 250 year comparison of historical, macrofossil and pollen records of aquatic plants in a shallow lake. Freshwater Biology 50(10), 1671-1686.
Davidson, T. A., Sayer, C. D., Langdon, P. G., Burgess, A. M. Y. & Jackson, M. (2010). Inferring past zooplanktivorous fish and macrophyte density in a shallow lake: application of a new regression tree model. Freshwater Biology 55(3), 584-599.
Davidson, T. A., Sayer, C. D., Perrow, M. R. & Tomlinson, M. L. (2003). Representation of fish communities by scale sub-fossils in shallow lakes: implications for inferring percid-cyprinid shifts. Journal of Paleolimnology 30(4), 441-449.
De Araújo, T. P., Brighenti, L. S., Dolabela, B. M., Ribeiro, S. P., Dos Santos, H. B. & Thomé, R. G. (2022). Can the introduction of non-native fish induce variation in life-history traits of a native species in a neotropical lake? Marine and Freshwater Research 73(5), 651-661.
Degerman, E., Hammar, J., Nyberg, P. & Svärdson, G. (2001). Human impact on the fish diversity in the four largest lakes of Sweden. AMBIO: A Journal of the Human Environment 30(8), 522-528.
Ding, C., Jiang, X., Xie, Z. & Brosse, S. (2017). Seventy-five years of biodiversity decline of fish assemblages in Chinese isolated plateau lakes: widespread introductions and extirpations of narrow endemics lead to regional loss of dissimilarity. Diversity and Distributions 23(2), 171-184.
Doble, C. J., Hipperson, H., Salzburger, W., Horsburgh, G. J., Mwita, C., Murrell, D. J. & Day, J. J. (2020). Testing the performance of environmental DNA metabarcoding for surveying highly diverse tropical fish communities: a case study from Lake Tanganyika. Environmental DNA 2(1), 24-41.
Doi, H., Matsuoka, S., Matsuzaki, S.-I., Nagano, M., Sato, H., Yamanaka, H., Matsuhashi, S., Yamamoto, S., Minamoto, T., Araki, H., Ikeda, K., Kato, A., Kumei, K., Maki, N., Mitsuzuka, T., et al. (2023). Species traits and ecosystem characteristics affect species detection by eDNA metabarcoding in lake fish communities. Freshwater Biology 68, 1346-1358.
Domaizon, I., Winegardner, A., Capo, E., Gauthier, J. & Gregory-Eaves, I. (2017). DNA-based methods in paleolimnology: new opportunities for investigating long-term dynamics of lacustrine biodiversity. Journal of Paleolimnology 58(1), 1-21.
Drake, D. C. & Naiman, R. J. (2000). An evaluation of restoration efforts in fishless lakes stocked with exotic trout. Conservation Biology 14(6), 1807-1820.
Drenner, R. W., Smith, J. D., Mummert, J. R. & Lancaster, H. F. (1990). Responses of a eutrophic pond community to separate and combined effects of N:P supply and planktivorous fish: a mesocosm experiment. Hydrobiologia 208(3), 161-167.
Dudgeon, D. (2022). Threatened Freshwater Animals of Tropical East Asia: Ecology and Conservation in a Rapidly Changing Environment. Taylor & Francis, New York.
Dudgeon, D., Arthington, A. H., Gessner, M. O., Kawabata, Z.-I., Knowler, D. J., Lévêque, C., Naiman, R. J., Prieur-Richard, A.-H., Soto, D., Stiassny, M. L. J. & Sullivan, C. A. (2006). Freshwater biodiversity: importance, threats, status and conservation challenges. Biological Reviews 81(2), 163-182.
Dunn, N. R., Allibone, R. M., Closs, G. P., Crow, S. K., David, B. O., Goodman, J. M., Griffiths, M., Jack, D. C., Ling, N., Waters, J. M. & Rolfe, J. R. (2018). Conservation status of New Zealand freshwater fishes, 2017. In New Zealand Threat Classification Series 24, p. 11. Department of Conservation, Wellington.
Eccles, D. H. (1976). Mass mortalities of Lates (Pisces: Centropomidae) in Lake Albert. Journal of the Limnological Society of Southern Africa 2(1), 7-10.
Eichmiller, J. J., Bajer, P. G. & Sorensen, P. W. (2014). The relationship between the distribution of common carp and their environmental DNA in a small lake. PLoS One 9(11), e112611.
El Serafy, G. Y. H., Schaeffer, B. A., Neely, M.-B., Spinosa, A., Odermatt, D., Weathers, K. C., Baracchini, T., Bouffard, D., Carvalho, L., Conmy, R. N., Keukelaere, L. D., Hunter, P. D., Jamet, C., Joehnk, K. D., Johnston, J. M., et al. (2021). Integrating inland and coastal water quality data for actionable knowledge. Remote Sensing 13(15), 2899.
Elliot, M. B., Flenley, J. R. & Sutton, D. G. (1998). A late Holocene pollen record of deforestation and environmental change from the Lake Tauanui catchment, Northland, New Zealand. Journal of Paleolimnology 19(1), 23-32.
Eloranta, A. P., Johnsen, S. I., Power, M., Baerum, K. M., Sandlund, O. T., Finstad, A. G., Rognerud, S. & Museth, J. (2019). Introduced European smelt (Osmerus eperlanus) affects food web and fish community in a large Norwegian lake. Biological Invasions 21(1), 85-98.
Evans, D. O., Nicholls, K. H., Allen, Y. C. & Mcmurtry, M. J. (1996). Historical land use, phosphorus loading, and loss of fish habitat in Lake Simcoe, Canada. Canadian Journal of Fisheries and Aquatic Sciences 53(S1), 194-218.
Evans, N. T. & Lamberti, G. A. (2018). Freshwater fisheries assessment using environmental DNA: a primer on the method, its potential, and shortcomings as a conservation tool. Fisheries Research 197, 60-66.
Evans, N. T., Shirey, P. D., Wieringa, J. G., Mahon, A. R. & Lamberti, G. A. (2017). Comparative cost and effort of fish distribution detection via environmental DNA analysis and electrofishing. Fisheries 42(2), 90-99.
Fang, J., Wang, Z., Zhao, S., Li, Y., Tang, Z., Yu, D., Ni, L., Liu, H., Xie, P., Da, L., Li, Z. & Zheng, C. (2006). Biodiversity changes in the lakes of the Central Yangtze. Frontiers in Ecology and the Environment 4(7), 369-377.
Feld, C. K., Birk, S., Eme, D., Gerisch, M., Hering, D., Kernan, M., Maileht, K., Mischke, U., Ott, I., Pletterbauer, F., Poikane, S., Salgado, J., Sayer, C. D., Van Wichelen, J. & Malard, F. (2016). Disentangling the effects of land use and geo-climatic factors on diversity in European freshwater ecosystems. Ecological Indicators 60, 71-83.
Ferrari, M. C. O., Lysak, K. R. & Chivers, D. P. (2010). Turbidity as an ecological constraint on learned predator recognition and generalization in a prey fish. Animal Behaviour 79(2), 515-519.
Feuchtmayr, H., Moran, R., Hatton, K., Connor, L., Heyes, T., Moss, B., Harvey, I. & Atkinson, D. (2009). Global warming and eutrophication: effects on water chemistry and autotrophic communities in experimental hypertrophic shallow lake mesocosms. Journal of Applied Ecology 46(3), 713-723.
Ficke, A. D., Myrick, C. A. & Hansen, L. J. (2007). Potential impacts of global climate change on freshwater fisheries. Reviews in Fish Biology and Fisheries 17(4), 581-613.
Fidani, C. (2013). Biological anomalies around the 2009 L'Aquila earthquake. Animals 3(3), 693-721.
Fierro, P., Valdovinos, C., Arismendi, I., Díaz, G., Ruiz De Gamboa, M. & Arriagada, L. (2019). Assessment of anthropogenic threats to Chilean Mediterranean freshwater ecosystems: literature review and expert opinions. Environmental Impact Assessment Review 77, 114-121.
Figueiredo, B. R. S., Mormul, R. P., Chapman, B. B., Lolis, L. A., Fiori, L. F. & Benedito, E. (2016). Turbidity amplifies the non-lethal effects of predation and affects the foraging success of characid fish shoals. Freshwater Biology 61(3), 293-300.
Findlay, C. S., Bert, D. G. & Zheng, L. (2000). Effect of introduced piscivores on native minnow communities in Adirondack lakes. Canadian Journal of Fisheries and Aquatic Sciences 57(3), 570-580.
Finigan, P. A., Mandrak, N. E. & Tufts, B. L. (2018). Large-scale changes in the littoral fish communities of lakes in southeastern Ontario, Canada. Canadian Journal of Zoology 96(7), 753-759.
Finney, B. P., Gregory-Eaves, I., Sweetman, J., Douglas, M. S. V. & Smol, J. P. (2000). Impacts of climatic change and fishing on Pacific salmon abundance over the past 300 years. Science 290(5492), 795-799.
Fischer, P. & Öhl, U. (2005). Effects of water-level fluctuations on the littoral benthic fish community in lakes: a mesocosm experiment. Behavioral Ecology 16(4), 741-746.
Flannigan, M. D., Stocks, B. J. & Wotton, B. M. (2000). Climate change and forest fires. Science of the Total Environment 262(3), 221-229.
Frey, D. G. (1988a). Littoral and offshore communities of diatoms, cladocerans and dipterous larvae, and their interpretation in paleolimnology. Journal of Paleolimnology 1(3), 179-191.
Frey, D. G. (1988b). What is paleolimnology? Journal of Paleolimnology 1(1), 5-8.
Fujii, K., Doi, H., Matsuoka, S., Nagano, M., Sato, H. & Yamanaka, H. (2019). Environmental DNA metabarcoding for fish community analysis in backwater lakes: a comparison of capture methods. PLoS One 14(1), e0210357.
Gayosso-Morales, M. A., Nandini, S., Martínez-Jeronimo, F. F. & Sarma, S. S. S. (2019). Fish-mediated zooplankton community structure in shallow turbid waters: a mesocosm study. Wetlands Ecology and Management 27(5), 651-661.
Goforth, R. R. & Carman, S. M. (2009). Multiscale relationships between Great Lakes nearshore fish communities and anthropogenic shoreline factors. Journal of Great Lakes Research 35(2), 215-223.
González, M. J., Knoll, L. B. & Vanni, M. J. (2010). Differential effects of elevated nutrient and sediment inputs on survival, growth and biomass of a common larval fish species (Dorosoma cepedianum). Freshwater Biology 55(3), 654-669.
Gorman, M. W., Zimmer, K. D., Herwig, B. R., Hanson, M. A., Wright, R. G., Vaughn, S. R. & Younk, J. A. (2014). Relative importance of phosphorus, fish biomass, and watershed land use as drivers of phytoplankton abundance in shallow lakes. Science of the Total Environment 466-467, 849-855.
Goulon, C., Le Meaux, O., Vincent-Falquet, R. & Guillard, J. (2021). Hydroacoustic autonomous boat for remote fish detection in LakE (HARLE), an unmanned autonomous surface vehicle to monitor fish populations in lakes. Limnology and Oceanography: Methods 19(4), 280-292.
Gozlan, R. E. (2008). Introduction of non-native freshwater fish: is it all bad? Fish and Fisheries 9(1), 106-115.
Gozlan, R. E., Britton, J. R., Cowx, I. & Copp, G. H. (2010). Current knowledge on non-native freshwater fish introductions. Journal of Fish Biology 76(4), 751-786.
Gray, S. M., Bieber, F. M. E., Mcdonnell, L. H., Chapman, L. J. & Mandrak, N. E. (2014). Experimental evidence for species-specific response to turbidity in imperilled fishes. Aquatic Conservation: Marine and Freshwater Ecosystems 24(4), 546-560.
Gregory-Eaves, I., Selbie, D. T., Sweetman, J., Finney, B. P. & Smol, J. P. (2009). Tracking sockeye salmon population dynamics from lake sediment cores: a review and synthesis. Challenges for diadromous fishes in a dynamic global environment. American Fisheries Society, Symposium 69, 379-393.
Gregory-Eaves, I., Smol, J. P., Douglas, M. S. V. & Finney, B. P. (2003). Diatoms and sockeye salmon (Oncorhynchus nerka) population dynamics: reconstructions of salmon-derived nutrients over the past 2200 years in two lakes from Kodiak Island, Alaska. Journal of Paleolimnology 30(1), 35-53.
Guillard, J. & Vergès, C. (2007). The repeatability of fish biomass and size distribution estimates obtained by hydroacoustic surveys using various sampling strategies and statistical analyses. International Review of Hydrobiology 92(6), 605-617.
Gurevitch, J. & Padilla, D. K. (2004). Are invasive species a major cause of extinctions? Trends in Ecology & Evolution 19(9), 470-474.
Han, M., Fukushima, M., Kameyama, S., Fukushima, T. & Matsushita, B. (2008). How do dams affect freshwater fish distributions in Japan? Statistical analysis of native and nonnative species with various life histories. Ecological Research 23(4), 735-743.
Hänfling, B., Lawson Handley, L., Read, D. S., Hahn, C., Li, J., Nichols, P., Blackman, R. C., Oliver, A. & Winfield, I. J. (2016). Environmental DNA metabarcoding of lake fish communities reflects long-term data from established survey methods. Molecular Ecology 25(13), 3101-3119.
Hanisch, J. R. (2016). Effects of Stocked Trout on Native Fauna of Productive Lakes. University of Alberta, Edmonton.
Hansen, B. K., Bekkevold, D., Clausen, L. W. & Nielsen, E. E. (2018). The sceptical optimist: challenges and perspectives for the application of environmental DNA in marine fisheries. Fish and Fisheries 19(5), 751-768.
Hecky, R. E., Bootsma, H. A. & Kingdon, M. L. (2003). Impact of land use on sediment and nutrient yields to Lake Malawi/Nyasa (Africa). Journal of Great Lakes Research 29, 139-158.
Heino, J., Virkkala, R. & Toivonen, H. (2009). Climate change and freshwater biodiversity: detected patterns, future trends and adaptations in northern regions. Biological Reviews 84(1), 39-54.
Helminen, H., Karjalainen, J., Kurkilahti, M., Rask, M. & Sarvala, J. (2000). Eutrophication and fish biodiversity in Finnish lakes. SIL Proceedings 27(1), 194-199.
Helmus, M. R. & Sass, G. G. (2008). The rapid effects of a whole-lake reduction of coarse woody debris on fish and benthic macroinvertebrates. Freshwater Biology 53(7), 1423-1433.
Hoagland, S. J. (2017). Integrating traditional ecological knowledge with western science for optimal natural resource management. IK: Other Ways of Knowing 3(1), 1-15.
Holmgren, K., Degerman, E., Petersson, E. & Bergquist, B. (2016). Long term trends of fish after liming of Swedish streams and lakes. Atmospheric Environment 146, 245-251.
Holmlund, C. M. & Hammer, M. (1999). Ecosystem services generated by fish populations. Ecological Economics 29(2), 253-268.
Holtham, A. J., Gregory-Eaves, I., Pellatt, M. G., Selbie, D. T., Stewart, L., Finney, B. P. & Smol, J. P. (2004). The influence of flushing rates, terrestrial input and low salmon escapement densities on paleolimnological reconstructions of sockeye salmon (Oncorhynchus nerka) nutrient dynamics in Alaska and British Columbia. Journal of Paleolimnology 32(3), 255-271.
Hyslop, E. J. (1980). Stomach contents analysis-a review of methods and their application. Journal of Fish Biology 17(4), 411-429.
Jackson, M. C., Loewen, C. J. G., Vinebrooke, R. D. & Chimimba, C. T. (2016). Net effects of multiple stressors in freshwater ecosystems: a meta-analysis. Global Change Biology 22(1), 180-189.
Jacobson, P. C., Hansen, G. J., Olmanson, L. G., Wehrly, K. E., Hein, C. L. & Johnson, L. B. (2019). Loss of Coldwater fish habitat in glaciated lakes of the midwestern United States after a century of land use and climate change. Advances in Understanding Landscape Influences on Freshwater Habitats and Biological Assemblages 90, 141-158.
Jacques, J. M. S., Douglas, M. S. V., Price, N., Drakulic, N. & Gubala, C. P. (2005). The effect of fish introductions on the diatom and cladoceran communities of Lake Opeongo, Ontario, Canada. Hydrobiologia 549(1), 99-113.
Jakubavičiūtė, E., Heather, F., Višinskienė, G., Morkvėnas, A., Gorfine, H., Pūtys, Ž., Ložys, L. & Audzijonyte, A. (2022). Historical fish survey datasets from productive aquatic ecosystems in Lithuania. Data in Brief 41, 107990.
Javed, M. & Usmani, N. (2015). Impact of heavy metal toxicity on hematology and glycogen status of fish: a review. Proceedings of the National Academy of Sciences, India Section B: Biological Sciences 85(4), 889-900.
Javed, M. & Usmani, N. (2019). An overview of the adverse effects of heavy metal contamination on fish health. Proceedings of the National Academy of Sciences, India Section B: Biological Sciences 89(2), 389-403.
Jelks, H. L., Walsh, S. J., Burkhead, N. M., Contreras-Balderas, S., Diaz-Pardo, E., Hendrickson, D. A., Lyons, J., Mandrak, N. E., Mccormick, F., Nelson, J. S., Platania, S. P., Porter, B. A., Renaud, C. B., Schmitter-Soto, J. J., Taylor, E. B. & Warren, M. L. (2008). Conservation status of imperiled north American freshwater and diadromous fishes. Fisheries 33(8), 372-407.
Jellyman, P. G. & Harding, J. S. (2012). The role of dams in altering freshwater fish communities in New Zealand. New Zealand Journal of Marine and Freshwater Research 46(4), 475-489.
Jennings, M. J., Bozek, M. A., Hatzenbeler, G. R., Emmons, E. E. & Staggs, M. D. (1999). Cumulative effects of incremental shoreline habitat modification on fish assemblages in north temperate lakes. North American Journal of Fisheries Management 19(1), 18-27.
Jennings, M. J., Emmons, E. E., Hatzenbeler, G. R., Edwards, C. & Bozek, M. A. (2003). Is littoral habitat affected by residential development and land use in watersheds of Wisconsin lakes? Lake and Reservoir Management 19(3), 272-279.
Jeppesen, E., Jensen, J. P., Amsinck, S., Landkildehus, F., Lauridsen, T. & Mitchell, S. F. (2002). Reconstructing the historical changes in daphnia mean size and planktivorous fish abundance in lakes from the size of Daphnia ephippia in the sediment. Journal of Paleolimnology 27(1), 133-143.
Jeppesen, E., Jensen, J. P., Skovgaard, H. & Hvidt, C. B. (2001a). Changes in the abundance of planktivorous fish in Lake Skanderborg during the past two centuries-a palaeoecological approach. Palaeogeography, Palaeoclimatology, Palaeoecology 172(1), 143-152.
Jeppesen, E., Lauridsen, T. L., Mitchell, S. F., Christoffersen, K. & Burns, C. W. (2000a). Trophic structure in the pelagial of 25 shallow New Zealand lakes: changes along nutrient and fish gradients. Journal of Plankton Research 22(5), 951-968.
Jeppesen, E., Leavitt, P., De Meester, L. & Jensen, J. P. (2001b). Functional ecology and palaeolimnology: using cladoceran remains to reconstruct anthropogenic impact. Trends in Ecology & Evolution 16(4), 191-198.
Jeppesen, E., Madsen, E. A., Jensen, J. P. & Anderson, N. (1996). Reconstructing the past density of planktivorous fish and trophic structure from sedimentary zooplankton fossils: a surface sediment calibration data set from shallow lakes. Freshwater Biology 36(1), 115-127.
Jeppesen, E., Meerhoff, M., Holmgren, K., González-Bergonzoni, I., Teixeira-De Mello, F., Declerck, S. A. J., De Meester, L., Søndergaard, M., Lauridsen, T. L., Bjerring, R., Conde-Porcuna, J. M., Mazzeo, N., Iglesias, C., Reizenstein, M., Malmquist, H. J., et al. (2010). Impacts of climate warming on lake fish community structure and potential effects on ecosystem function. Hydrobiologia 646(1), 73-90.
Jeppesen, E., Mehner, T., Winfield, I. J., Kangur, K., Sarvala, J., Gerdeaux, D., Rask, M., Malmquist, H. J., Holmgren, K., Volta, P., Romo, S., Eckmann, R., Sandström, A., Blanco, S., Kangur, A., et al. (2012). Impacts of climate warming on the long-term dynamics of key fish species in 24 European lakes. Hydrobiologia 694(1), 1-39.
Jeppesen, E., Peder Jensen, J., Søndergaard, M., Lauridsen, T. & Landkildehus, F. (2000b). Trophic structure, species richness and biodiversity in Danish lakes: changes along a phosphorus gradient. Freshwater Biology 45(2), 201-218.
Jerde, C. L., Mahon, A. R., Chadderton, W. L. & Lodge, D. M. (2011). ‘Sight-unseen’ detection of rare aquatic species using environmental DNA. Conservation Letters 4(2), 150-157.
Jia, P., Zhang, W. & Liu, Q. (2013). Lake fisheries in China: challenges and opportunities. Fisheries Research 140, 66-72.
Johnson, D. W. (1968). Pesticides and fishes-a review of selected literature. Transactions of the American Fisheries Society 97(4), 398-424.
Johnson, M. G., Kelso, J. R. M., Mcneil, O. C. & Morton, W. B. (1990). Fossil midge associations and the historical status of fish in acidified lakes. Journal of Paleolimnology 3(2), 113-127.
Jones, J. I. & Sayer, C. D. (2003). Does the fish-invertebrate-periphyton cascade precipitate plant loss in shallow lakes? Ecology 84(8), 2155-2167.
Juncos, R., Milano, D., Macchi, P. J. & Vigliano, P. H. (2015). Niche segregation facilitates coexistence between native and introduced fishes in a deep Patagonian lake. Hydrobiologia 747(1), 53-67.
Kadykalo, A. N., Cooke, S. J. & Young, N. (2021). The role of western-based scientific, indigenous and local knowledge in wildlife management and conservation. People and Nature 3(3), 610-626.
Kangur, K., Kangur, P., Ginter, K., Orru, K., Haldna, M., Möls, T. & Kangur, A. (2013). Long-term effects of extreme weather events and eutrophication on the fish community of shallow Lake Peipsi (Estonia/Russia). Journal of Limnology 72(2), 376-387.
Kangur, K., Park, Y.-S., Kangur, A., Kangur, P. & Lek, S. (2007). Patterning long-term changes of fish community in large shallow Lake Peipsi. Ecological Modelling 203(1), 34-44.
Kaufman, L. (1992). Catastrophic change in species-rich freshwater ecosystems. BioScience 42(11), 846-858.
Kaufmann, P. R., Hughes, R. M., Whittier, T. R., Bryce, S. A. & Paulsen, S. G. (2014). Relevance of lake physical habitat indices to fish and riparian birds. Lake and Reservoir Management 30(2), 177-191.
Kealiikanakaoleohaililani, K. & Giardina, C. P. (2016). Embracing the sacred: an indigenous framework for tomorrow's sustainability science. Sustainability Science 11(1), 57-67.
Kelly, D. J. & Jellyman, D. J. (2007). Changes in trophic linkages to shortfin eels (Anguilla australis) since the collapse of submerged macrophytes in Lake Ellesmere, New Zealand. Hydrobiologia 579(1), 161-173.
Kelly, D. J. & Schallenberg, M. (2019). Assessing food web structure in relation to nutrient enrichment, macrophyte collapse and lake resilience in shallow lowland lakes. New Zealand Journal of Marine and Freshwater Research 53(4), 603-619.
Knutson, T. R., Mcbride, J. L., Chan, J., Emanuel, K., Holland, G., Landsea, C., Held, I., Kossin, J. P., Srivastava, A. K. & Sugi, M. (2010). Tropical cyclones and climate change. Nature Geoscience 3(3), 157-163.
Kottelat, M. & Freyhof, J. (2007). Handbook of European Freshwater Fishes. Publications Kottelat, Cornol and Berlin.
Lamontagne, S. & Schindler, D. W. (1994). Historical status of fish populations in Canadian rocky mountain lakes inferred from subfossil Chaoborus (Diptera: Chaoboridae) mandibles. Canadian Journal of Fisheries and Aquatic Sciences 51(6), 1376-1383.
Lawson Handley, L., Read, D. S., Winfield, I. J., Kimbell, H., Johnson, H., Li, J., Hahn, C., Blackman, R., Wilcox, R., Donnelly, R., Szitenberg, A. & Hänfling, B. (2019). Temporal and spatial variation in distribution of fish environmental DNA in England's largest lake. Environmental DNA 1(1), 26-39.
Legaspi, K., Lau, A. Y. A., Jordan, P., Mackay, A., Mcgowan, S., Mcglynn, G., Baldia, S., Papa, R. D. & Taylor, D. (2015). Establishing the impacts of freshwater aquaculture in tropical Asia: the potential role of palaeolimnology. Geo: Geography and Environment 2(2), 148-163.
Lemly, A. D. (2002). Symptoms and implications of selenium toxicity in fish: the Belews Lake case example. Aquatic Toxicology 57(1), 39-49.
Lemmens, P., Declerck, S. a. J., Tuytens, K., Vanderstukken, M. & De Meester, L. (2018). Bottom-up effects on biomass versus top-down effects on identity: a multiple-lake fish community manipulation experiment. Ecosystems 21(1), 166-177.
Leprieur, F., Brosse, S., García-Berthou, E., Oberdorff, T., Olden, J. D. & Townsend, C. R. (2009). Scientific uncertainty and the assessment of risks posed by non-native freshwater fishes. Fish and Fisheries 10(1), 88-97.
Lévêque, C., Oberdorff, T., Paugy, D., Stiassny, M. L. J. & Tedesco, P. A. (2007). Global diversity of fish (Pisces) in freshwater. In Freshwater Animal Diversity Assessment. Developments in Hydrobiology (Volume 198, eds E. V. Balian, C. Lévêque, H. Segers and K. Martens), pp. 545-567. Springer, Dordrecht.
Li, D., Hao, Y. & Duan, Y. (2020). Nonintrusive methods for biomass estimation in aquaculture with emphasis on fish: a review. Reviews in Aquaculture 12(3), 1390-1411.
Li, J., Hatton-Ellis, T. W., Lawson Handley, L.-J., Kimbell, H. S., Benucci, M., Peirson, G. & Hänfling, B. (2019). Ground-truthing of a fish-based environmental DNA metabarcoding method for assessing the quality of lakes. Journal of Applied Ecology 56, 1232-1244.
Liermann, C. R., Nilsson, C., Robertson, J. & Ng, R. Y. (2012). Implications of dam obstruction for global freshwater fish diversity. BioScience 62(6), 539-548.
Lindström, M. (2001). Urban land use influences on heavy metal fluxes and surface sediment concentrations of small lakes. Water, Air, and Soil Pollution 126(3), 363-383.
Liu, G., Liu, Z., Chen, F., Zhang, Z., Gu, B. & Smoak, J. M. (2013). Response of the cladoceran community to eutrophication, fish introductions and degradation of the macrophyte vegetation in Lake Dianchi, a large, shallow plateau lake in southwestern China. Limnology 14(2), 159-166.
Liu, G., Liu, Z., Li, Y., Chen, F., Gu, B. & Smoak, J. M. (2009). Effects of fish introduction and eutrophication on the cladoceran community in Lake Fuxian, a deep oligotrophic lake in Southwest China. Journal of Paleolimnology 42(3), 427-435.
Liu, X., Dur, G., Ban, S., Sakai, Y., Ohmae, S. & Morita, T. (2020). Planktivorous fish predation masks anthropogenic disturbances on decadal trends in zooplankton biomass and body size structure in Lake Biwa, Japan. Limnology and Oceanography 65(3), 667-682.
Lowe-Mcconnell, R. H. (1993). Fish faunas of the African Great Lakes: origins, diversity, and vulnerability. Conservation Biology 7(3), 634-643.
Lucas, M. C. & Baras, E. (2000). Methods for studying spatial behaviour of freshwater fishes in the natural environment. Fish and Fisheries 1(4), 283-316.
Lydeard, C. & Belk, M. C. (1993). Management of indigenous fish species impacted by introduced mosquitofish: an experimental approach. The Southwestern Naturalist 38(4), 370-373.
Maasri, A., Jähnig, S. C., Adamescu, M. C., Adrian, R., Baigun, C., Baird, D. J., Batista-Morales, A., Bonada, N., Brown, L. E., Cai, Q., Campos-Silva, J. V., Clausnitzer, V., Contreras-Macbeath, T., Cooke, S. J., Datry, T., et al. (2022). A global agenda for advancing freshwater biodiversity research. Ecology Letters 25(2), 255-263.
Maezono, Y., Kobayashi, R., Kusahara, M. & Miyashita, T. (2005). Direct and indirect effects of exotic bass and bluegill on exotic and native organisms in farm ponds. Ecological Applications 15(2), 638-650.
Mandrak, N. E. (1989). Potential invasion of the Great Lakes by fish species associated with climatic warming. Journal of Great Lakes Research 15(2), 306-316.
Marin, K., Coon, A. & Fraser, D. J. (2017). Traditional ecological knowledge reveals the extent of sympatric lake trout diversity and habitat preferences. Ecology and Society 22(2), 20.
Matisoo-Smith, E., Roberts, K., Welikala, N., Tannock, G., Chester, P., Feek, D. & Flenley, J. (2008). Recovery of DNA and pollen from New Zealand lake sediments. Quaternary International 184(1), 139-149.
Matsuzaki, S.-I. S., Suzuki, K., Kadoya, T., Nakagawa, M. & Takamura, N. (2018). Bottom-up linkages between primary production, zooplankton, and fish in a shallow, hypereutrophic lake. Ecology 99(9), 2025-2036.
Matthaei, C. D. & Lange, K. (2016). Multiple-stressor effects on freshwater fish: a review and meta-analysis. In Conservation of Freshwater Fishes (eds G. P. Closs, M. Krkosek and J. D. Olden), pp. 178-214. Cambridge University Press, Cambridge.
Mattocks, S., Hall, C. J. & Jordaan, A. (2017). Damming, lost connectivity, and the historical role of anadromous fish in freshwater ecosystem dynamics. BioScience 67(8), 713-728.
McDowall, R. (1990). New Zealand Freshwater Fishes. A Natural History Guide. Heinemann Reed, Auckland.
McDowall, R. M. (2006). Crying wolf, crying foul, or crying shame: alien salmonids and a biodiversity crisis in the southern cool-temperate galaxioid fishes? Reviews in Fish Biology and Fisheries 16(3), 233-422.
McEwan, A. J. & Crisp, P. (2019). Restoration of a New Zealand lagoon: evaluation of two years of introduced fish control trials. Ecological Restoration 37(2), 90-100.
Meerhoff, M., Teixeira-De Mello, F., Kruk, C., Alonso, C., González-Bergonzoni, I., Pacheco, J. P., Lacerot, G., Arim, M., Beklioğlu, M., Brucet, S., Goyenola, G., Iglesias, C., Mazzeo, N., Kosten, S. & Jeppesen, E. (2012). Environmental warming in Shallow Lakes: a review of potential changes in community structure as evidenced from space-for-time substitution approaches. Advances in Ecological Research 46, 259-349.
Mihoub, J.-B., Henle, K., Titeux, N., Brotons, L., Brummitt, N. A. & Schmeller, D. S. (2017). Setting temporal baselines for biodiversity: the limits of available monitoring data for capturing the full impact of anthropogenic pressures. Scientific Reports 7, 41591.
Milardi, M., Siitonen, S., Lappalainen, J., Liljendahl, A. & Weckström, J. (2016). The impact of trout introductions on macro- and micro-invertebrate communities of fishless boreal lakes. Journal of Paleolimnology 55(3), 273-287.
Mills, M. D., Rader, R. B. & Belk, M. C. (2004). Complex interactions between native and invasive fish: the simultaneous effects of multiple negative interactions. Oecologia 141(4), 713-721.
Mirimin, L., Hickey, A., Barrett, D., Defaoite, F., Boschetti, S., Venkatesh, S. & Graham, C. T. (2020). Environmental DNA detection of Arctic char (Salvelinus alpinus) in Irish lakes: development and application of a species-specific molecular assay. Environmental DNA 2(2), 221-233.
Miya, M., Gotoh, R. O. & Sado, T. (2020). MiFish metabarcoding: a high-throughput approach for simultaneous detection of multiple fish species from environmental DNA and other samples. Fisheries Science 86(6), 939-970.
Molina, J. L., García Aróstegui, J. L., Benavente, J., Varela, C., De La Hera, A. & López Geta, J. A. (2009). Aquifers overexploitation in SE Spain: a proposal for the Integrated analysis of water management. Water Resources Management 23(13), 2737-2760.
Moncayo-Estrada, R., Lyons, J., Escalera-Gallardo, C. & Lind, O. T. (2012). Long-term change in the biotic integrity of a shallow tropical lake: a decadal analysis of the Lake Chapala fish community. Lake and Reservoir Management 28(1), 92-104.
Mor, J.-R., Ciampittiello, M., Brignone, S., Jeppesen, E. & Volta, P. (2022). Fish communities in Italian sub-alpine lakes: Non-native species and anthropogenic pressures increase community dissimilarities. Science of the Total Environment 832, 154959.
Moran, R., Harvey, I. A. N., Moss, B., Feuchtmayr, H., Hatton, K., Heyes, T. O. M. & Atkinson, D. (2010). Influence of simulated climate change and eutrophication on three-spined stickleback populations: a large scale mesocosm experiment. Freshwater Biology 55(2), 315-325.
Moss, B., Stephen, D., Balayla, D. M., Bécares, E., Collings, S. E., Fernández-Aláez, C., Fernández-Aláez, M., Ferriol, C., García, P., Gomá, J., Gyllström, M., Hansson, L. A., Hietala, J., Kairesalo, T., Miracle, M. R., et al. (2004). Continental-scale patterns of nutrient and fish effects on shallow lakes: synthesis of a pan-European mesocosm experiment. Freshwater Biology 49(12), 1633-1649.
Mustonen, T. (2014). Endemic time-spaces of Finland: aquatic regimes. Fennia-International Journal of Geography 192(2), 120-139.
Mustonen, T. & Huusari, N. (2020). How to know about waters? Finnish traditional knowledge related to waters and implications for management reforms. Reviews in Fish Biology and Fisheries 30(4), 699-718.
Nara, F., Tani, Y., Soma, Y., Soma, M., Naraoka, H., Watanabe, T., Horiuchi, K., Kawai, T., Oda, T. & Nakamura, T. (2005). Response of phytoplankton productivity to climate change recorded by sedimentary photosynthetic pigments in Lake Hovsgol (Mongolia) for the last 23,000 years. Quaternary International 136(1), 71-81.
Nelson-Chorney, H. T., Davis, C. S., Poesch, M. S., Vinebrooke, R. D., Carli, C. M. & Taylor, M. K. (2019). Environmental DNA in lake sediment reveals biogeography of native genetic diversity. Frontiers in Ecology and the Environment 17(6), 313-318.
Newman, R. M., Henson, F. G. & Richards, C. (2020). Competition between invasive ruffe (Gymnocephalus cernua) and native yellow perch (Perca flavescens) in experimental mesocosms. Fishes 5(4), 33.
Njagi, D. M., Routh, J., Odhiambo, M., Luo, C., Basapuram, L. G., Olago, D., Klump, V. & Stager, C. (2022). A century of human-induced environmental changes and the combined roles of nutrients and land use in Lake Victoria catchment on eutrophication. Science of the Total Environment 835, 155425.
Nolan, E. T. & Britton, J. R. (2018). Diet of invasive pikeperch Sander lucioperca: developing non-destructive tissue sampling for stable isotope analysis with comparisons to stomach contents analysis. Knowledge & Management of Aquatic Ecosystems 419, 49.
Northcote, T. G. (1988). Fish in the structure and function of freshwater ecosystems: a ‘top-down’ view. Canadian Journal of Fisheries and Aquatic Sciences 45(2), 361-379.
Ogutu-Ohwayo, R. (1990). The decline of the native fishes of lakes Victoria and Kyoga (East Africa) and the impact of introduced species, especially the Nile perch, Lates niloticus, and the Nile tilapia, Oreochromis niloticus. Environmental Biology of Fishes 27(2), 81-96.
Olajos, F., Bokma, F., Bartels, P., Myrstener, E., Rydberg, J., Öhlund, G., Bindler, R., Wang, X.-R., Zale, R. & Englund, G. (2018). Estimating species colonization dates using DNA in lake sediment. Methods in Ecology and Evolution 9(3), 535-543.
Olin, M., Rask, M., Ruuhljärvi, J., Kurkilahti, M., Ala-Opas, P. & Ylönen, O. (2002). Fish community structure in mesotrophic and eutrophic lakes of southern Finland: the relative abundances of percids and cyprinids along a trophic gradient. Journal of Fish Biology 60(3), 593-612.
Pacheco, J. P., Aznarez, C., Meerhoff, M., Liu, Y., Li, W., Baattrup-Pedersen, A., Yu, C. & Jeppesen, E. (2021). Small-sized omnivorous fish induce stronger effects on food webs than warming and eutrophication in experimental shallow lakes. Science of the Total Environment 797, 148998.
Palacios-Fest, M. R., Alin, S. R., Cohen, A. S., Tanner, B. & Heuser, H. (2005). Paleolimnological investigations of anthropogenic environmental change in Lake Tanganyika: IV. Lacustrine paleoecology. Journal of Paleolimnology 34(1), 51-71.
Palm, F., El-Daoushy, F. & Svensson, J.-E. (2011). Fragmented subfossil Chaoborus mandibles reveal periods of cyprinid presence in lake histories. Journal of Paleolimnology 45(1), 101-113.
Palm, F., Stenson, J. A. E. & Lagergren, R. (2005). Which paleolimnological zooplankton records can indicate changes in planktivorous fish predation? SIL Proceedings 29(2), 661-666.
Palm, F. & Svensson, J.-E. (2010). Subfossil Chaoborus mandibles confirm historical fish decline in two acidified lakes, SW Sweden. Fundamental and Applied Limnology 177(4), 313-320.
Paperno, R., Tremain, D. M., Adams, D. H., Sebastian, A. P., Sauer, J. T. & Dutka-Gianelli, J. (2006). The disruption and recovery of fish communities in the Indian River lagoon, Florida, following two hurricanes in 2004. Estuaries and Coasts 29(6), 1004-1010.
Parai, R. I. (2021). The Past, Present, and Future of Tuna at Lake Moāwhitu: Drawing on the Two Knowledge Baskets of Mātauranga Māori and Western Science. Te Herenga Waka-Victoria University of Wellington, Wellington.
Parlee, B. L., Geertsema, K. & Willier, A. (2012). Social-ecological thresholds in a changing boreal landscape: insights from Cree knowledge of the Lesser Slave Lake region of Alberta, Canada. Ecology and Society 17(2), 20.
Pascual, M. A., Cussac, V., Dyer, B., Soto, D., Vigliano, P., Ortubay, S. & Macchi, P. (2007). Freshwater fishes of Patagonia in the 21st Century after a hundred years of human settlement, species introductions, and environmental change. Aquatic Ecosystem Health & Management 10(2), 212-227.
Perga, M.-E., Desmet, M., Enters, D. & Reyss, J.-L. (2010). A century of bottom-up- and top-down driven changes on a lake planktonic food web: a paleoecological and paleoisotopic study of Lake Annecy, France. Limnology and Oceanography 55(2), 803-816.
Persson, L., Diehl, S., Johansson, L., Andersson, G. & Hamrin, S. F. (1991). Shifts in fish communities along the productivity gradient of temperate lakes-patterns and the importance of size-structured interactions. Journal of Fish Biology 38(2), 281-293.
Phillips, M. J., Beveridge, M. C. M. & Ross, L. G. (1985). The environmental impact of salmonid cage culture on inland fisheries: present status and future trends. Journal of Fish Biology 27, 123-137.
Pilati, A., Vanni, M. J., González, M. J. & Gaulke, A. K. (2009). Effects of agricultural subsidies of nutrients and detritus on fish and plankton of shallow-reservoir ecosystems. Ecological Applications 19(4), 942-960.
Pingram, M. A., Collier, K. J., Özkundakci, D. & Garrett-Walker, J. (2020). Food web characteristics of fish communities across degraded lakes provide insights for management in multi-stressor environments. Aquatic Ecology 54(1), 401-419.
Pollom, R. A. & Rose, G. A. (2016). A global review of the spatial, taxonomic, and temporal scope of freshwater fisheries hydroacoustics research. Environmental Reviews 24(3), 333-347.
Pope, K. L., Lochmann, S. E. & Young, M. K. (2010). Methods for Assessing Fish Populations, p. 74. Nebraska Cooperative Fish & Wildlife Research Unit - Staff Publications, Nebraska.
Preston, D. L., Hedman, H. D. & Johnson, P. T. J. (2018). Nutrient availability and invasive fish jointly drive community dynamics in an experimental aquatic system. Ecosphere 9(3), e02153.
Pukk, L., Kanefsky, J., Heathman, A. L., Weise, E. M., Nathan, L. R., Herbst, S. J., Sard, N. M., Scribner, K. T. & Robinson, J. D. (2021). eDNA metabarcoding in lakes to quantify influences of landscape features and human activity on aquatic invasive species prevalence and fish community diversity. Diversity and Distributions 27(10), 2016-2031.
Rader, R. B. & Richardson, C. J. (1992). The effects of nutrient enrichment on algae and macroinvertebrates in the Everglades: a review. Wetlands 12(2), 121-135.
Radinger, J., Britton, J. R., Carlson, S. M., Magurran, A. E., Alcaraz-Hernández, J. D., Almodóvar, A., Benejam, L., Fernández-Delgado, C., Nicola, G. G., Oliva-Paterna, F. J., Torralva, M. & García-Berthou, E. (2019). Effective monitoring of freshwater fish. Fish and Fisheries 20(4), 729-747.
Rahel, F. J. & Olden, J. D. (2008). Assessing the effects of climate change on aquatic invasive species. Conservation Biology 22(3), 521-533.
Raposeiro, P. M., Rubio, M. J., González, A., Hernández, A., Sánchez-López, G., Vázquez-Loureiro, D., Rull, V., Bao, R., Costa, A. C., Gonçalves, V., Sáez, A. & Giralt, S. (2017). Impact of the historical introduction of exotic fishes on the chironomid community of Lake Azul (Azores Islands). Palaeogeography, Palaeoclimatology, Palaeoecology 466, 77-88.
Rechulicz, J. & Płaska, W. (2021). The diet of non-indigenous Ameiurus nebulosus of varying size and its potential impact on native fish in shallow lakes. Global Ecology and Conservation 31, e01881.
Reid, A. J., Carlson, A. K., Creed, I. F., Eliason, E. J., Gell, P. A., Johnson, P. T. J., Kidd, K. A., Maccormack, T. J., Olden, J. D., Ormerod, S. J., Smol, J. P., Taylor, W. W., Tockner, K., Vermaire, J. C., Dudgeon, D. & Cooke, S. J. (2019). Emerging threats and persistent conservation challenges for freshwater biodiversity. Biological Reviews 94(3), 849-873.
Reinthal, P. N., Cohen, A. S. & Dettman, D. L. (2011). Fish fossils as paleo-indicators of ichthyofauna composition and climatic change in Lake Malawi, Africa. Palaeogeography, Palaeoclimatology, Palaeoecology 303(1), 126-132.
Rennie, M. D., Kennedy, P. J., Mills, K. H., Rodgers, C. M. C., Charles, C., Hrenchuk, L. E., Chalanchuk, S., Blanchfield, P. J., Paterson, M. J. & Podemski, C. L. (2019). Impacts of freshwater aquaculture on fish communities: a whole-ecosystem experimental approach. Freshwater Biology 64(5), 870-885.
Ribeiro, F. & Leunda, P. M. (2012). Non-native fish impacts on Mediterranean freshwater ecosystems: current knowledge and research needs. Fisheries Management and Ecology 19(2), 142-156.
Ritterbusch, D., Blabolil, P., Breine, J., Erős, T., Mehner, T., Olin, M., Peirson, G., Volta, P. & Poikane, S. (2022). European fish-based assessment reveals high diversity of systems for determining ecological status of lakes. Science of the Total Environment 802, 149620.
Rourke, M. L., Fowler, A. M., Hughes, J. M., Broadhurst, M. K., Dibattista, J. D., Fielder, S., Wilkes Walburn, J. & Furlan, E. M. (2022). Environmental DNA (eDNA) as a tool for assessing fish biomass: a review of approaches and future considerations for resource surveys. Environmental DNA 4(1), 9-33.
Rowe, D. K., Smith, J. & Williams, E. (2002). Effects of turbidity on the feeding ability of adult, riverine smelt (Retropinna retropinna) and inanga (Galaxias maculatus). New Zealand Journal of Marine and Freshwater Research 36(1), 143-150.
Rytwinski, T., Algera, D. A., Taylor, J. J., Smokorowski, K. E., Bennett, J. R., Harrison, P. M. & Cooke, S. J. (2017). What are the consequences of fish entrainment and impingement associated with hydroelectric dams on fish productivity? A systematic review protocol. Environmental Evidence 6(1), 8.
Salo, J., Walls, M., Rajasilta, M., Sarvala, J., Räsänen, M. & Salonen, V.-P. (1989). Fish predation and reduction in body size in a Cladoceran population: palaeoecological evidence. Freshwater Biology 21(2), 217-221.
Sass, L. L., Bozek, M. A., Hauxwell, J. A., Wagner, K. & Knight, S. (2010). Response of aquatic macrophytes to human land use perturbations in the watersheds of Wisconsin lakes, USA. Aquatic Botany 93(1), 1-8.
Sayer, C. D., Davidson, T. A., Jones, J. I. & Langdon, P. G. (2010). Combining contemporary ecology and palaeolimnology to understand shallow lake ecosystem change. Freshwater Biology 55(3), 487-499.
Schenekar, T., Schletterer, M., Lecaudey, L. A. & Weiss, S. J. (2020). Reference databases, primer choice, and assay sensitivity for environmental metabarcoding: lessons learnt from a re-evaluation of an eDNA fish assessment in the Volga headwaters. River Research and Applications 36(7), 1004-1013.
Scheuerell, M. D. & Schindler, D. E. (2004). Changes in the spatial distribution of fishes in lakes along a residential development gradient. Ecosystems 7(1), 98-106.
Schindler, D. W. (1998). Whole-ecosystem experiments: replication versus realism: the need for ecosystem-scale experiments. Ecosystems 1(4), 323-334.
Schofield, P. J., Slone, D. H., Gregoire, D. R. & Loftus, W. F. (2014). Effects of a non-native cichlid fish (African jewelfish, Hemichromis letourneuxi Sauvage 1880) on a simulated Everglades aquatic community. Hydrobiologia 722(1), 171-182.
Schrank, S. J., Guy, C. S. & Fairchild, J. F. (2003). Competitive interactions between age-0 bighead carp and paddlefish. Transactions of the American Fisheries Society 132(6), 1222-1228.
Selene, P., Paolo, P., Marco, B., Salvi, G., Franz, F., Marino, P. & Pizzul, E. (2020). Changes in midge assemblages (Diptera Chironomidae) in an alpine lake from the Italian Western Alps: the role and importance of fish introduction. Hydrobiologia 847(11), 2393-2415.
Sharma, S., Meyer, M. F., Culpepper, J., Yang, X., Hampton, S., Berger, S. A., Brousil, M. R., Fradkin, S. C., Higgins, S. N., Jankowski, K. J., Kirillin, G., Smits, A. P., Whitaker, E. C., Yousef, F. & Zhang, S. (2020). Integrating perspectives to understand lake ice dynamics in a changing world. Journal of Geophysical Research: Biogeosciences 125(8), e2020JG005799.
Sharma, S., Vander Zanden, M. J., Magnuson, J. J. & Lyons, J. (2011). Comparing climate change and species invasions as drivers of Coldwater fish population extirpations. PLoS One 6(8), e22906.
Short, J., Tibby, J., Vandergoes, M. J., Wood, S. A., Lomax, N., Puddick, J., Pearman, J. K., Howarth, J. D., Moy, C. M., Šunde, C., Martin, R., Li, X., Moody, A., Dahl, J., Shepherd, C. & Mcfarlane, K. (2022). Using palaeolimnology to guide rehabilitation of a culturally significant lake in New Zealand. Aquatic Conservation: Marine and Freshwater Ecosystems 32(6), 931-950.
Sigsgaard, E. E., Carl, H., Møller, P. R. & Thomsen, P. F. (2015). Monitoring the near-extinct European weather loach in Denmark based on environmental DNA from water samples. Biological Conservation 183, 46-52.
Šiling, R. & Urbanič, G. (2016). Do lake littoral benthic invertebrates respond differently to eutrophication, hydromorphological alteration, land use and fish stocking? Knowledge & Management of Aquatic Ecosystems 417, 35.
Simon, K. S. & Townsend, C. R. (2003). Impacts of freshwater invaders at different levels of ecological organisation, with emphasis on salmonids and ecosystem consequences. Freshwater Biology 48(6), 982-994.
Skov, T., Buchaca, T., Amsinck, S. L., Landkildehus, F., Odgaard, B. V., Azevedo, J., Gonçalves, V., Raposeiro, P. M., Andersen, T. J. & Jeppesen, E. (2010). Using invertebrate remains and pigments in the sediment to infer changes in trophic structure after fish introduction in Lake Fogo: a crater lake in the Azores. Hydrobiologia 654(1), 13-25.
Smith, G. R. & Dibble, C. J. (2012). Effects of an invasive fish (Gambusia affinis) and anthropogenic nutrient enrichment on American toad (Anaxyrus americanus) tadpoles. Journal of Herpetology 46(2), 198-202.
Smith, S. H. (1968). Species succession and fishery exploitation in the Great Lakes. Journal of the Fisheries Research Board of Canada 25(4), 667-693.
Smokorowski, K. E. & Pratt, T. C. (2007). Effect of a change in physical structure and cover on fish and fish habitat in freshwater ecosystems - a review and meta-analysis. Environmental Reviews 15, 15-41.
Søndergaard, M., Jeppesen, E., Peder Jensen, J. & Lildal Amsinck, S. (2005). Water framework directive: ecological classification of Danish lakes. Journal of Applied Ecology 42(4), 616-629.
Spear, M. J., Embke, H. S., Krysan, P. J. & Vander Zanden, M. J. (2021). Application of eDNA as a tool for assessing fish population abundance. Environmental DNA 3(1), 83-91.
Spens, J. (2007). Can historical names and fishers' knowledge help to reconstruct the distribution of fish populations in lakes. In Fishers' Knowledge in Fisheries Science and Management. Coastal Management Sourcebooks (Volume 4, eds N. Haggan, B. Neis and I. Baird), pp. 329-349. United Nations Educational, Scientific and Cultural Organization, Paris.
Squier, A. H., Hodgson, D. A. & Keely, B. J. (2002). Sedimentary pigments as markers for environmental change in an Antarctic lake. Organic Geochemistry 33(12), 1655-1665.
Stager, J. C., Sporn, L. A., Johnson, M. & Regalado, S. (2015). Of paleo-genes and perch: what if an ‘alien’ is actually a native? PLoS One 10(3), e0119071.
Steinman, A. D., Conklin, J., Bohlen, P. J. & Uzarski, D. G. (2003). Influence of cattle grazing and pasture land use on macroinvertebrate communities in freshwater wetlands. Wetlands 23(4), 877-889.
Stendera, S., Adrian, R., Bonada, N., Cañedo-Argüelles, M., Hugueny, B., Januschke, K., Pletterbauer, F. & Hering, D. (2012). Drivers and stressors of freshwater biodiversity patterns across different ecosystems and scales: a review. Hydrobiologia 696(1), 1-28.
Stewart, E. M., Michelutti, N., Blais, J. M., Mallory, M. L., Douglas, M. S. V. & Smol, J. P. (2013). Contrasting the effects of climatic, nutrient, and oxygen dynamics on subfossil chironomid assemblages: a paleolimnological experiment from eutrophic High Arctic ponds. Journal of Paleolimnology 49(2), 205-219.
Stivrins, N., Liiv, M., Brown, A., Banerjea, R. Y., Heinsalu, A. & Veski, S. (2019). Investigating the impact of anthropogenic land use on a hemiboreal lake ecosystem using carbon/nitrogen ratios and coupled-optical emission spectroscopy. Palaeogeography, Palaeoclimatology, Palaeoecology 518, 1-9.
Stockwell, J. D., Ebener, M. P., Black, J. A., Gorman, O. T., Hrabik, T. R., Kinnunen, R. E., Mattes, W. P., Oyadomari, J. K., Schram, S. T., Schreiner, D. R., Seider, M. J., Sitar, S. P. & Yule, D. L. (2009). A synthesis of cisco recovery in Lake Superior: implications for native fish rehabilitation in the Laurentian Great Lakes. North American Journal of Fisheries Management 29(3), 626-652.
Strayer, D. L. (2010). Alien species in fresh waters: ecological effects, interactions with other stressors, and prospects for the future. Freshwater Biology 55(s1), 152-174.
Strock, K. E., Saros, J. E., Simon, K. S., Mcgowan, S. & Kinnison, M. T. (2013). Cascading effects of generalist fish introduction in oligotrophic lakes. Hydrobiologia 711(1), 99-113.
Stuart-Smith, R. D., Stuart-Smith, J. F., White, R. W. G. & Barmuta, L. A. (2007). The effects of turbidity and complex habitats on the feeding of a galaxiid fish are clear and simple. Marine and Freshwater Research 58(5), 429-435.
Sullivan, C. A. & Meigh, J. (2007). Integration of the biophysical and social sciences using an indicator approach: addressing water problems at different scales. Water Resources Management 21(1), 111-128.
Sutela, T. & Vehanen, T. (2008). Effects of water-level regulation on the nearshore fish community in boreal lakes. In Ecological Effects of Water-Level Fluctuations in Lakes (eds K. M. Wantzen, K.-O. Rothhaupt, M. Mörtl, M. Cantonati, L. G. Tóth and P. Fischer), pp. 13-20. Springer Netherlands, Dordrecht.
Sutton, T., Zeiber, R. A. & Fisher, B. E. (2009). Mesocosm evaluation of western mosquitofish impacts on northern starhead topminnows. Proceedings of the Indiana Academy of Science 118, 88-95.
Sweetman, J. N. & Smol, J. P. (2006). Reconstructing fish populations using Chaoborus (Diptera: Chaoboridae) remains - a review. Quaternary Science Reviews 25(15), 2013-2023.
Takahara, T., Minamoto, T. & Doi, H. (2013). Using environmental DNA to estimate the distribution of an invasive fish species in ponds. PLoS One 8(2), e56584.
Takahara, T., Minamoto, T., Yamanaka, H., Doi, H. & Kawabata, Z. I. (2012). Estimation of fish biomass using environmental DNA. PLoS One 7(4), e35868.
Takeuchi, Y., Ochi, H., Kohda, M., Sinyinza, D. & Hori, M. (2010). A 20-year census of a rocky littoral fish community in Lake Tanganyika. Ecology of Freshwater Fish 19(2), 239-248.
Tammi, J., Appelberg, M., Beier, U., Hesthagen, T., Lappalainen, A. & Rask, M. (2003). Fish status survey of Nordic Lakes: effects of acidification, eutrophication and stocking activity on present fish species composition. Ambio: A Journal of the Human Environment 32(2), 98-105.
Tammi, J., Lappalainen, A., Mannio, J., Rask, M. & Vuorenmaa, J. (1999). Effects of eutrophication on fish and fisheries in Finnish lakes: a survey based on random sampling. Fisheries Management and Ecology 6(3), 173-186.
Taranu, Z. E., Köster, D., Hall, R. I., Charette, T., Forrest, F., Cwynar, L. C. & Gregory-Eaves, I. (2010). Contrasting responses of dimictic and polymictic lakes to environmental change: a spatial and temporal study. Aquatic Sciences 72(1), 97-115.
Tengö, M., Brondizio, E. S., Elmqvist, T., Malmer, P. & Spierenburg, M. (2014). Connecting diverse knowledge systems for enhanced ecosystem governance: the multiple evidence base approach. Ambio 43(5), 579-591.
Tessier, A., Descloux, S., Lae, R., Cottet, M., Guedant, P. & Guillard, J. (2016). Fish assemblages in large tropical reservoirs: overview of fish population monitoring methods. Reviews in Fisheries Science & Aquaculture 24(2), 160-177.
Thomsen, P. F., Kielgast, J. O. S., Iversen, L. L., Wiuf, C., Rasmussen, M., Gilbert, M. T. P., Orlando, L. & Willerslev, E. (2012). Monitoring endangered freshwater biodiversity using environmental DNA. Molecular Ecology 21(11), 2565-2573.
Thomson-Laing, G., Howarth, J. D., Vandergoes, M. J. & Wood, S. A. (2022). Optimised protocol for the extraction of fish DNA from freshwater sediments. Freshwater Biology 67(9), 1584-1603.
Tran, T. N. Q., Jackson, M. C., Sheath, D., Verreycken, H. & Britton, J. R. (2015). Patterns of trophic niche divergence between invasive and native fishes in wild communities are predictable from mesocosm studies. Journal of Animal Ecology 84(4), 1071-1080.
Trumpickas, J., Mandrak, N. E. & Ricciardi, A. (2011). Nearshore fish assemblages associated with introduced predatory fishes in lakes. Aquatic Conservation: Marine and Freshwater Ecosystems 21(4), 338-347.
Turgeon, K., Turpin, C. & Gregory-Eaves, I. (2019). Dams have varying impacts on fish communities across latitudes: a quantitative synthesis. Ecology Letters 22(9), 1501-1516.
Turner, C. R., Miller, D. J., Coyne, K. J. & Corush, J. (2014). Improved methods for capture, extraction, and quantitative assay of environmental DNA from Asian bigheaded carp (Hypophthalmichthys spp.). PLoS One 9(12), e114329.
Tweddle, D. & Crossley, R. (1991). Effects of an earthquake on demersal cichlid fishes of southern Lake Malawi. Journal of Fish Biology 38(2), 305-308.
Uutala, A. J. (1990). Chaoborus (Diptera: Chaoboridae) mandibles-paleolimnological indicators of the historical status of fish populations in acid-sensitive lakes. Journal of Paleolimnology 4(2), 139-151.
Uutala, A. J. & Smol, J. P. (1996). Paleolimnological reconstructions of long-term changes in fisheries status in Sudbury area lakes. Canadian Journal of Fisheries and Aquatic Sciences 53(1), 174-180.
Valentini, A., Taberlet, P., Miaud, C., Civade, R., Herder, J., Thomsen, P. F., Bellemain, E., Besnard, A., Coissac, E., Boyer, F., Gaboriaud, C., Jean, P., Poulet, N., Roset, N., Copp, G. H., et al. (2016). Next-generation monitoring of aquatic biodiversity using environmental DNA metabarcoding. Molecular Ecology 25(4), 929-942.
Van Egeren, S. J., Dodson, S. I., Torke, B. & Maxted, J. T. (2011). The relative significance of environmental and anthropogenic factors affecting zooplankton community structure in Southeast Wisconsin till plain lakes. Hydrobiologia 668(1), 137-146.
Vander Zanden, M. J., Casselman, J. M. & Rasmussen, J. B. (1999). Stable isotope evidence for the food web consequences of species invasions in lakes. Nature 401(6752), 464-467.
Vander Zanden, M. J., Chandra, S., Allen, B. C., Reuter, J. E. & Goldman, C. R. (2003). Historical food web structure and restoration of native aquatic communities in the Lake Tahoe (California-Nevada) basin. Ecosystems 6(3), 274-288.
Vander Zanden, M. J. & Vadeboncoeur, Y. (2002). Fishes as integrators of benthic and pelagic food webs in lakes. Ecology 83(8), 2152-2161.
Vanni, M. J., Renwick, W. H., Bowling, A. M., Horgan, M. J. & Christian, A. D. (2011). Nutrient stoichiometry of linked catchment-lake systems along a gradient of land use. Freshwater Biology 56(5), 791-811.
Vaughn, C. C. (2010). Biodiversity losses and ecosystem function in freshwaters: emerging conclusions and research directions. BioScience 60(1), 25-35.
Vautier, M., Chardon, C., Goulon, C., Guillard, J. & Domaizon, I. (2023). A quantitative eDNA-based approach to monitor fish spawning in lakes: application to European perch and whitefish. Fisheries Research 264, 106708.
Verschuren, D. & Marnell, L. F. (1997). Fossil zooplankton and the historical status of westslope cutthroat trout in a headwater Lake of Glacier National Park, Montana. Transactions of the American Fisheries Society 126(1), 21-34.
Vollmer, D., Shaad, K., Souter, N. J., Farrell, T., Dudgeon, D., Sullivan, C. A., Fauconnier, I., Macdonald, G. M., Mccartney, M. P., Power, A. G., Mcnally, A., Andelman, S. J., Capon, T., Devineni, N., Apirumanekul, C., et al. (2018). Integrating the social, hydrological and ecological dimensions of freshwater health: the freshwater health index. Science of the Total Environment 627, 304-313.
Wahl, D. H., Wolfe, M. D., Santucci, V. J. & Freedman, J. A. (2011). Invasive carp and prey community composition disrupt trophic cascades in eutrophic ponds. Hydrobiologia 678(1), 49-63.
Weber, M. J. & Brown, M. L. (2018). Evaluating potential competitive bottlenecks between invasive common carp and native bluegill and yellow perch. Ecology of Freshwater Fish 27(1), 216-224.
Wei, J., Nie, Z., Ji, F., Qiu, L. & Shen, J. (2021). Trophic niche overlap between invasive and indigenous fish in a northwest reservoir of China. Water 13(23), 3459.
Weidel, B. C., Josephson, D. C. & Kraft, C. E. (2007). Littoral fish community response to smallmouth bass removal from an Adirondack lake. Transactions of the American Fisheries Society 136(3), 778-789.
Weldon, L., O'Leary, C., Steer, M., Newton, L., Macdonald, H. & Sargeant, S. L. (2020). A comparison of European eel Anguilla Anguilla eDNA concentrations to fyke net catches in five Irish lakes. Environmental DNA 2(4), 587-600.
Whillans, T. H. (1979). Historic transformations of fish communities in three Great Lakes bays. Journal of Great Lakes Research 5(2), 195-215.
Whittier, T. R., Halliwell, D. B. & Paulsen, S. G. (1997). Cyprinid distributions in Northeast USA. lakes: evidence of regional-scale minnow biodiversity losses. Canadian Journal of Fisheries and Aquatic Sciences 54(7), 1593-1607.
Whittier, T. R. & Kincaid, T. M. (1999). Introduced fish in northeastern USA lakes: regional extent, dominance, and effect on native species richness. Transactions of the American Fisheries Society 128(5), 769-783.
Winfield, I. J. (2004). Fish in the littoral zone: ecology, threats and management. Limnologica 34(1), 124-131.
Witte, F., Goldschmidt, T., Wanink, J., Van Oijen, M., Goudswaard, K., Witte-Maas, E. & Bouton, N. (1992). The destruction of an endemic species flock: quantitative data on the decline of the haplochromine cichlids of Lake Victoria. Environmental Biology of Fishes 34(1), 1-28.
Wyllie De Echeverria, V. R. & Thornton, T. F. (2019). Using traditional ecological knowledge to understand and adapt to climate and biodiversity change on the Pacific coast of North America. Ambio 48(12), 1447-1469.
Yusishen, M. E., Eichorn, F.-C., Anderson, W. G. & Docker, M. F. (2020). Development of quantitative PCR assays for the detection and quantification of lake sturgeon (Acipenser fulvescens) environmental DNA. Conservation Genetics Resources 12(1), 17-19.
Zhang, S., Zhao, J. & Yao, M. (2020). A comprehensive and comparative evaluation of primers for metabarcoding eDNA from fish. Methods in Ecology and Evolution 11(12), 1609-1625.
Zhang, S., Zheng, Y., Zhan, A., Dong, C., Zhao, J. & Yao, M. (2022). Environmental DNA captures native and non-native fish community variations across the lentic and lotic systems of a megacity. Science Advances 8(6), eabk0097.

Auteurs

Georgia Thomson-Laing (G)

Cawthron Institute, 98 Halifax Street, The Wood, Nelson, 7010, New Zealand.
Victoria University of Wellington, PO Box 600, Wellington, 6140, New Zealand.

Lena Schallenberg (L)

University of Otago, PO Box 56, Dunedin, 9054, New Zealand.

David Kelly (D)

Cawthron Institute, 98 Halifax Street, The Wood, Nelson, 7010, New Zealand.

Jamie D Howarth (JD)

Victoria University of Wellington, PO Box 600, Wellington, 6140, New Zealand.

Susanna A Wood (SA)

Cawthron Institute, 98 Halifax Street, The Wood, Nelson, 7010, New Zealand.

Classifications MeSH