A non-canonical mechanism of GPCR activation.


Journal

bioRxiv : the preprint server for biology
Titre abrégé: bioRxiv
Pays: United States
ID NLM: 101680187

Informations de publication

Date de publication:
15 Aug 2023
Historique:
pubmed: 30 8 2023
medline: 30 8 2023
entrez: 30 8 2023
Statut: epublish

Résumé

The goal of designing safer, more effective drugs has led to tremendous interest in molecular mechanisms through which ligands can precisely manipulate signaling of G-protein-coupled receptors (GPCRs), the largest class of drug targets. Decades of research have led to the widely accepted view that all agonists-ligands that trigger GPCR activation-function by causing rearrangement of the GPCR's transmembrane helices, opening an intracellular pocket for binding of transducer proteins. Here we demonstrate that certain agonists instead trigger activation of free fatty acid receptor 1 by directly rearranging an intracellular loop that interacts with transducers. We validate the predictions of our atomic-level simulations by targeted mutagenesis; specific mutations which disrupt interactions with the intracellular loop convert these agonists into inverse agonists. Further analysis suggests that allosteric ligands could regulate signaling of many other GPCRs via a similar mechanism, offering rich possibilities for precise control of pharmaceutically important targets.

Identifiants

pubmed: 37645874
doi: 10.1101/2023.08.14.553154
pmc: PMC10462065
pii:
doi:

Types de publication

Preprint

Langues

eng

Subventions

Organisme : NIGMS NIH HHS
ID : T32 GM120007
Pays : United States

Déclaration de conflit d'intérêts

Competing Financial Interests A.K., S.S., J.D.S., J.L., S.M.S., J.M.J., A.M.W. are current or past employees of Merck Research Laboratories.

Auteurs

Alexander S Powers (AS)

Department of Chemistry, Stanford University, Stanford, CA 94305, USA.
Department of Computer Science, Stanford University, Stanford, CA 94305, USA.
Department of Molecular and Cellular Physiology, Stanford University School of Medicine, Stanford, CA 94305, USA.
Department of Structural Biology, Stanford University School of Medicine, Stanford, CA 94305, USA.
Institute for Computational and Mathematical Engineering, Stanford University, Stanford, CA 94305, USA.

Aasma Khan (A)

Department of Quantitative Biology, Merck & Co., Inc., West Point, PA, USA.

Joseph M Paggi (JM)

Department of Computer Science, Stanford University, Stanford, CA 94305, USA.
Department of Molecular and Cellular Physiology, Stanford University School of Medicine, Stanford, CA 94305, USA.
Department of Structural Biology, Stanford University School of Medicine, Stanford, CA 94305, USA.
Institute for Computational and Mathematical Engineering, Stanford University, Stanford, CA 94305, USA.

Naomi R Latorraca (NR)

Department of Computer Science, Stanford University, Stanford, CA 94305, USA.
Department of Molecular and Cellular Physiology, Stanford University School of Medicine, Stanford, CA 94305, USA.
Department of Structural Biology, Stanford University School of Medicine, Stanford, CA 94305, USA.
Institute for Computational and Mathematical Engineering, Stanford University, Stanford, CA 94305, USA.
Biophysics Program, Stanford University, Stanford, CA 94305, USA.
Department of Molecular and Cell Biology, University of California, Berkeley, CA 94720.

Sarah Souza (S)

Department of Quantitative Biology, Merck & Co., Inc., West Point, PA, USA.

Jerry Di Salvo (JD)

Evotec, Princeton, NJ 08540, USA.

Jun Lu (J)

Department of Structural Chemistry, Merck & Co., Inc., West Point, PA, USA.
Small Molecule Discovery, Zai Lab (US) LLC, 314 Main Street, Suite 04-100, Cambridge, MA 02142.

Stephen M Soisson (SM)

Department of Structural Chemistry, Merck & Co., Inc., West Point, PA, USA.
Protein Therapeutics and Structural Biology, Odyssey Therapeutics, 51 Sleeper Street, Suite 800, Boston, MA 02210.

Jennifer M Johnston (JM)

Department of Modeling and Informatics, Merck & Co., Inc., Rahway, NJ, USA.

Adam B Weinglass (AB)

Department of Quantitative Biology, Merck & Co., Inc., West Point, PA, USA.

Ron O Dror (RO)

Department of Computer Science, Stanford University, Stanford, CA 94305, USA.
Department of Molecular and Cellular Physiology, Stanford University School of Medicine, Stanford, CA 94305, USA.
Department of Structural Biology, Stanford University School of Medicine, Stanford, CA 94305, USA.
Institute for Computational and Mathematical Engineering, Stanford University, Stanford, CA 94305, USA.
Biophysics Program, Stanford University, Stanford, CA 94305, USA.

Classifications MeSH