AI-based diagnosis in mandibulofacial dysostosis with microcephaly using external ear shapes.

AI MFDM craniofacial malformation dysmorphology machine learning

Journal

Frontiers in pediatrics
ISSN: 2296-2360
Titre abrégé: Front Pediatr
Pays: Switzerland
ID NLM: 101615492

Informations de publication

Date de publication:
2023
Historique:
received: 27 02 2023
accepted: 26 07 2023
medline: 4 9 2023
pubmed: 4 9 2023
entrez: 4 9 2023
Statut: epublish

Résumé

Mandibulo-Facial Dysostosis with Microcephaly (MFDM) is a rare disease with a broad spectrum of symptoms, characterized by zygomatic and mandibular hypoplasia, microcephaly, and ear abnormalities. Here, we aimed at describing the external ear phenotype of MFDM patients, and train an Artificial Intelligence (AI)-based model to differentiate MFDM ears from non-syndromic control ears (binary classification), and from ears of the main differential diagnoses of this condition (multi-class classification): Treacher Collins (TC), Nager (NAFD) and CHARGE syndromes. The training set contained 1,592 ear photographs, corresponding to 550 patients. We extracted 48 patients completely independent of the training set, with only one photograph per ear per patient. After a CNN-(Convolutional Neural Network) based ear detection, the images were automatically landmarked. Generalized Procrustes Analysis was then performed, along with a dimension reduction using PCA (Principal Component Analysis). The principal components were used as inputs in an eXtreme Gradient Boosting (XGBoost) model, optimized using a 5-fold cross-validation. Finally, the model was tested on an independent validation set. We trained the model on 1,592 ear photographs, corresponding to 1,296 control ears, 105 MFDM, 33 NAFD, 70 TC and 88 CHARGE syndrome ears. The model detected MFDM with an accuracy of 0.969 [0.838-0.999] ( This is the first AI-based syndrome detection model in dysmorphology based on the external ear, opening promising clinical applications both for local care and referral, and for expert centers.

Identifiants

pubmed: 37664547
doi: 10.3389/fped.2023.1171277
pmc: PMC10469912
doi:

Types de publication

Journal Article

Langues

eng

Pagination

1171277

Informations de copyright

© 2023 Hennocq, Bongibault, Marlin, Amiel, Attie-Bitach, Baujat, Boutaud, Carpentier, Corre, Denoyelle, Djate Delbrah, Douillet, Galliani, Kamolvisit, Lyonnet, Milea, Pingault, Porntaveetus, Touzet-Roumazeille, Willems, Picard, Rio, Garcelon and Khonsari.

Déclaration de conflit d'intérêts

The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.

Références

Nat Med. 2019 Jan;25(1):60-64
pubmed: 30617323
J Appl Genet. 2015 May;56(2):199-204
pubmed: 25387991
N Engl J Med. 2003 Mar 20;348(12):1170-5
pubmed: 12646676
Psychol Rep. 1966 Aug;19(1):3-11
pubmed: 5942109
Int J Pediatr Otorhinolaryngol. 1986 Dec;12(2):137-43
pubmed: 3570680
Am J Med Genet A. 2009 Dec;149A(12):2762-4
pubmed: 19921636
Front Genet. 2020 Nov 11;11:580477
pubmed: 33262786
Hum Mutat. 2014 Apr;35(4):478-85
pubmed: 24470203
Am J Hum Genet. 2012 May 4;90(5):925-33
pubmed: 22541558
J Clin Lab Anal. 2020 Sep;34(9):e23426
pubmed: 32537850
Front Genet. 2022 Feb 08;13:808919
pubmed: 35211159
Iran J Otorhinolaryngol. 2012 Winter;24(66):45-50
pubmed: 24303385
Evolution. 2002 Oct;56(10):1909-20
pubmed: 12449478
Am J Hum Genet. 2006 Feb;78(2):303-14
pubmed: 16400610
N Engl J Med. 2019 Apr 4;380(14):1347-1358
pubmed: 30943338
Orphanet J Rare Dis. 2013 Jul 24;8:110
pubmed: 23879989
Am J Hum Genet. 2012 Feb 10;90(2):369-77
pubmed: 22305528
Clin Genet. 2013 Feb;83(2):125-34
pubmed: 22462537
IEEE Trans Pattern Anal Mach Intell. 2017 Jun;39(6):1137-1149
pubmed: 27295650
Orphanet J Rare Dis. 2006 Sep 07;1:34
pubmed: 16959034
Clin Dysmorphol. 2006 Jul;15(3):171-174
pubmed: 16760738
JAMA Surg. 2020 Feb 1;155(2):148-158
pubmed: 31825465
Int J Mol Sci. 2020 Feb 04;21(3):
pubmed: 32033219
Clin Dysmorphol. 2000 Oct;9(4):253-7
pubmed: 11045580
Genes (Basel). 2021 Sep 09;12(9):
pubmed: 34573374
Int Ophthalmol. 2014 Jun;34(3):623-7
pubmed: 23807150
J Stat Softw. 2017 Aug;79:
pubmed: 30686944
Radiology. 2018 Aug;288(2):318-328
pubmed: 29944078
BMJ Case Rep. 2019 Aug 13;12(8):
pubmed: 31413053
Eur J Med Genet. 2022 May;65(5):104478
pubmed: 35395430
Clin Genet. 2013 Jun;83(6):499-510
pubmed: 23565775
Int J Pediatr Otorhinolaryngol. 2021 Aug;147:110765
pubmed: 34058530
Am J Med Genet A. 2023 May;191(5):1210-1221
pubmed: 36714960
Hum Mutat. 2016 Feb;37(2):148-54
pubmed: 26507355
J Biomed Inform. 2018 Apr;80:52-63
pubmed: 29501921
Clin Dysmorphol. 2018 Apr;27(2):31-35
pubmed: 29381487
JAMA Dermatol. 2019 Oct 1;155(10):1105-1106
pubmed: 31411643
Eye (Lond). 2022 Apr;36(4):859-861
pubmed: 33931761
J Hum Genet. 2019 Aug;64(8):789-794
pubmed: 31138847
Cleft Palate Craniofac J. 2019 May;56(5):674-678
pubmed: 30343593
Am J Med Genet A. 2013 Jan;161A(1):108-13
pubmed: 23239648
Diagnostics (Basel). 2020 May 12;10(5):
pubmed: 32408545

Auteurs

Quentin Hennocq (Q)

Imagine Institute, INSERM UMR1163, Paris, France.
Service de Chirurgie Maxillo-Faciale et Chirurgie Plastique, Hôpital Necker-Enfants Malades, Assistance Publique-Hôpitaux de Paris, Centre de Référence des Malformations Rares de la Face et de la Cavité Buccale MAFACE, Filière Maladies Rares TeteCou, Faculté de Médecine, Université de Paris Cité, Paris, France.
Laboratoire 'Forme et Croissance du Crâne', Faculté de Médecine, Hôpital Necker-Enfants Malades, Assistance Publique-Hôpitaux de Paris, Université Paris Cité, Paris, France.

Thomas Bongibault (T)

Imagine Institute, INSERM UMR1163, Paris, France.
Laboratoire 'Forme et Croissance du Crâne', Faculté de Médecine, Hôpital Necker-Enfants Malades, Assistance Publique-Hôpitaux de Paris, Université Paris Cité, Paris, France.

Sandrine Marlin (S)

Imagine Institute, INSERM UMR1163, Paris, France.
Service de Médecine Génomique des Maladies Rares, Hôpital Necker-Enfants Malades, Assistance Publique-Hôpitaux de Paris, Faculté de Médecine, Université de Paris Cité, Paris, France.

Jeanne Amiel (J)

Imagine Institute, INSERM UMR1163, Paris, France.
Service de Médecine Génomique des Maladies Rares, Hôpital Necker-Enfants Malades, Assistance Publique-Hôpitaux de Paris, Faculté de Médecine, Université de Paris Cité, Paris, France.

Tania Attie-Bitach (T)

Imagine Institute, INSERM UMR1163, Paris, France.
Service de Médecine Génomique des Maladies Rares, Hôpital Necker-Enfants Malades, Assistance Publique-Hôpitaux de Paris, Faculté de Médecine, Université de Paris Cité, Paris, France.

Geneviève Baujat (G)

Imagine Institute, INSERM UMR1163, Paris, France.
Service de Médecine Génomique des Maladies Rares, Hôpital Necker-Enfants Malades, Assistance Publique-Hôpitaux de Paris, Faculté de Médecine, Université de Paris Cité, Paris, France.

Lucile Boutaud (L)

Service de Médecine Génomique des Maladies Rares, Hôpital Necker-Enfants Malades, Assistance Publique-Hôpitaux de Paris, Faculté de Médecine, Université de Paris Cité, Paris, France.

Georges Carpentier (G)

CHU Lille, Inserm, Service de Chirurgie Maxillo-Faciale et Stomatologie, U1008-Controlled Drug Delivery Systems and Biomaterial, Université de Lille, Lille, France.

Pierre Corre (P)

Department of Oral and Maxillofacial Surgery, INSERM U1229-Regenerative Medicine and Skeleton RMeS, Nantes, France.
Department of Oral and Maxillofacial Surgery, Nantes University, CHU Nantes, Nantes, France.

Françoise Denoyelle (F)

Department of Paediatric Otolaryngology, AP-HP, Hôpital Necker-Enfants Malades, Paris, France.

François Djate Delbrah (F)

Imagine Institute, INSERM UMR1163, Paris, France.

Maxime Douillet (M)

Imagine Institute, INSERM UMR1163, Paris, France.

Eva Galliani (E)

Service de Chirurgie Maxillo-Faciale et Chirurgie Plastique, Hôpital Necker-Enfants Malades, Assistance Publique-Hôpitaux de Paris, Centre de Référence des Malformations Rares de la Face et de la Cavité Buccale MAFACE, Filière Maladies Rares TeteCou, Faculté de Médecine, Université de Paris Cité, Paris, France.

Wuttichart Kamolvisit (W)

Center of Excellence for Medical Genomics, Department of Pediatrics, Faculty of Medicine, Chulalongkorn University, Bangkok, Thailand.
Center of Excellence in Genomics and Precision Dentistry, Department of Physiology, Faculty of Dentistry, Chulalongkorn University, Bangkok, Thailand.

Stanislas Lyonnet (S)

Imagine Institute, INSERM UMR1163, Paris, France.
Service de Médecine Génomique des Maladies Rares, Hôpital Necker-Enfants Malades, Assistance Publique-Hôpitaux de Paris, Faculté de Médecine, Université de Paris Cité, Paris, France.

Dan Milea (D)

Duke-NUS Medical School Singapore, Singapore Eye Research Institute, Singapore National Eye Centre, Singapore, Singapore.

Véronique Pingault (V)

Imagine Institute, INSERM UMR1163, Paris, France.
Service de Médecine Génomique des Maladies Rares, Hôpital Necker-Enfants Malades, Assistance Publique-Hôpitaux de Paris, Faculté de Médecine, Université de Paris Cité, Paris, France.

Thantrira Porntaveetus (T)

Center of Excellence for Medical Genomics, Department of Pediatrics, Faculty of Medicine, Chulalongkorn University, Bangkok, Thailand.
Center of Excellence in Genomics and Precision Dentistry, Department of Physiology, Faculty of Dentistry, Chulalongkorn University, Bangkok, Thailand.

Sandrine Touzet-Roumazeille (S)

CHU Lille, Inserm, Service de Chirurgie Maxillo-Faciale et Stomatologie, U1008-Controlled Drug Delivery Systems and Biomaterial, Université de Lille, Lille, France.

Marjolaine Willems (M)

Département de Génétique Clinique, CHRU de Montpellier, Hôpital Arnaud de Villeneuve, Institute for Neurosciences of Montpellier, INSERM, Univ Montpellier, Montpellier, France.

Arnaud Picard (A)

Service de Chirurgie Maxillo-Faciale et Chirurgie Plastique, Hôpital Necker-Enfants Malades, Assistance Publique-Hôpitaux de Paris, Centre de Référence des Malformations Rares de la Face et de la Cavité Buccale MAFACE, Filière Maladies Rares TeteCou, Faculté de Médecine, Université de Paris Cité, Paris, France.

Marlène Rio (M)

Imagine Institute, INSERM UMR1163, Paris, France.
Service de Médecine Génomique des Maladies Rares, Hôpital Necker-Enfants Malades, Assistance Publique-Hôpitaux de Paris, Faculté de Médecine, Université de Paris Cité, Paris, France.

Nicolas Garcelon (N)

Imagine Institute, INSERM UMR1163, Paris, France.

Roman H Khonsari (RH)

Imagine Institute, INSERM UMR1163, Paris, France.
Service de Chirurgie Maxillo-Faciale et Chirurgie Plastique, Hôpital Necker-Enfants Malades, Assistance Publique-Hôpitaux de Paris, Centre de Référence des Malformations Rares de la Face et de la Cavité Buccale MAFACE, Filière Maladies Rares TeteCou, Faculté de Médecine, Université de Paris Cité, Paris, France.
Laboratoire 'Forme et Croissance du Crâne', Faculté de Médecine, Hôpital Necker-Enfants Malades, Assistance Publique-Hôpitaux de Paris, Université Paris Cité, Paris, France.

Classifications MeSH