PharmVar Tutorial on CYP2D6 Structural Variation Testing and Recommendations on Reporting.


Journal

Clinical pharmacology and therapeutics
ISSN: 1532-6535
Titre abrégé: Clin Pharmacol Ther
Pays: United States
ID NLM: 0372741

Informations de publication

Date de publication:
Dec 2023
Historique:
received: 16 06 2023
accepted: 23 08 2023
pubmed: 5 9 2023
medline: 5 9 2023
entrez: 5 9 2023
Statut: ppublish

Résumé

The Pharmacogene Variation Consortium (PharmVar) provides nomenclature for the highly polymorphic human CYP2D6 gene locus and a comprehensive summary of structural variation. CYP2D6 contributes to the metabolism of numerous drugs and, thus, genetic variation in its gene impacts drug efficacy and safety. To accurately predict a patient's CYP2D6 phenotype, testing must include structural variants including gene deletions, duplications, hybrid genes, and combinations thereof. This tutorial offers a comprehensive overview of CYP2D6 structural variation, terms, and definitions, a review of methods suitable for their detection and characterization, and practical examples to address the lack of standards to describe CYP2D6 structural variants or any other pharmacogene. This PharmVar tutorial offers practical guidance on how to detect the many, often complex, structural variants, as well as recommends terms and definitions for clinical and research reporting. Uniform reporting is not only essential for electronic health record-keeping but also for accurate translation of a patient's genotype into phenotype which is typically utilized to guide drug therapy.

Identifiants

pubmed: 37669183
doi: 10.1002/cpt.3044
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

1220-1237

Subventions

Organisme : NHGRI NIH HHS
ID : U24 HG010135
Pays : United States
Organisme : NHGRI NIH HHS
ID : U24 HG010615
Pays : United States
Organisme : NIH HHS
ID : U24HG010135
Pays : United States
Organisme : NIH HHS
ID : U24 HG010615
Pays : United States
Organisme : NIH HHS
ID : U24HG010135
Pays : United States
Organisme : NIH HHS
ID : U24 HG010615
Pays : United States

Informations de copyright

© 2023 The Authors. Clinical Pharmacology & Therapeutics © 2023 American Society for Clinical Pharmacology and Therapeutics.

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Auteurs

Amy J Turner (AJ)

Department of Pediatrics, Children's Research Institute, The Medical College of Wisconsin, Milwaukee, Wisconsin, USA.
RPRD Diagnostics LLC, Wauwatosa, Wisconsin, USA.

Charity Nofziger (C)

PharmGenetix GmbH, Niederalm, Austria.

Bronwyn E Ramey (BE)

Let's Get Checked, New York, New York, USA.

Reynold C Ly (RC)

Division of Diagnostic Genomics, Department of Medical and Molecular Genetics, Indiana University School of Medicine, Indianapolis, Indiana, USA.

Chad A Bousman (CA)

Department of Medical Genetics, University of Calgary, Calgary, Alberta, Canada.

José A G Agúndez (JAG)

University of Extremadura, Cáceres, Spain.
Institute of Molecular Pathology Biomarkers, Cáceres, Spain.

Katrin Sangkuhl (K)

Department of Biomedical Data Science, Stanford University, Stanford, California, USA.

Michelle Whirl-Carrillo (M)

Department of Biomedical Data Science, Stanford University, Stanford, California, USA.

Simone Vanoni (S)

PharmGenetix GmbH, Niederalm, Austria.

Henry M Dunnenberger (HM)

Mark R. Neaman Center for Personalized Medicine, NorthShore University Health System, Evanston, Illinois, USA.

Gualberto Ruaño (G)

Institute of Living, Hartford Hospital, Hartford, Connecticut, USA.
Department of Psychiatry, University of Connecticut School of Medicine, Farmington, Connecticut, USA.

Martin A Kennedy (MA)

Department of Pathology and Biomedical Science, University of Otago, Christchurch, New Zealand.

Michael S Phillips (MS)

Precision Medicine Advisers, Montreal, Quebec, Canada.

Houda Hachad (H)

Department of Clinical Operations, AccessDx Laboratories, Houston, Texas, USA.

Teri E Klein (TE)

Department of Biomedical Data Science and Medicine (BMIR), Stanford University, Stanford, California, USA.

Ann M Moyer (AM)

Division of Laboratory Genetics and Genomics, Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, Minnesota, USA.

Andrea Gaedigk (A)

Children's Mercy Research Institute (CMRI), Kansas City, Missouri, USA.
School of Medicine, University of Missouri-Kansas City, Kansas City, Missouri, USA.

Classifications MeSH