DNA Structure Design Is Improved Using an Artificially Expanded Alphabet of Base Pairs Including Loop and Mismatch Thermodynamic Parameters.

Base Pairing Thermodynamics Algorithms DNA Nucleotides
DNA folding thermodynamics DNA secondary structure design expanded DNA alphabet synthetic biology

Journal

ACS synthetic biology
ISSN: 2161-5063
Titre abrégé: ACS Synth Biol
Pays: United States
ID NLM: 101575075

Informations de publication

Date de publication:
15 09 2023
Historique:
medline: 18 9 2023
pubmed: 6 9 2023
entrez: 6 9 2023
Statut: ppublish

Résumé

We show that

Identifiants

DOI: 10.1021/acssynbio.3c00358 PMID: 37671922 PMC: PMC10510751
pubmed: 37671922
doi: 10.1021/acssynbio.3c00358
pmc: PMC10510751
doi:

Substances chimiques

DNA 9007-49-2
Nucleotides 0

Types de publication

Journal Article Research Support, U.S. Gov't, Non-P.H.S. Research Support, N.I.H., Extramural

Langues

eng

Sous-ensembles de citation

IM

Pagination

2750-2763

Commentaires et corrections

Type : UpdateOf

Références

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Auteurs

Tuan M Pham (TM)

Department of Biochemistry & Biophysics and Center for RNA Biology, University of Rochester Medical Center, Rochester, New York 14642, United States.

Terrel Miffin (T)

Department of Chemistry & Biochemistry, University of Maryland, College Park, Maryland 20742, United States.

Hongying Sun (H)

Department of Surgery, University of Rochester Medical Center, Rochester, New York 14642, United States.

Kenneth K Sharp (KK)

Department of Chemistry & Biochemistry, University of Maryland, College Park, Maryland 20742, United States.

Xiaoyu Wang (X)

Department of Chemistry & Biochemistry, University of Maryland, College Park, Maryland 20742, United States.

Mingyi Zhu (M)

Department of Biochemistry & Biophysics and Center for RNA Biology, University of Rochester Medical Center, Rochester, New York 14642, United States.

Shuichi Hoshika (S)

Foundation for Applied Molecular Evolution, Alachua, Florida 32615, United States.
ORCID: 0000-0001-9128-1183

Raymond J Peterson (RJ)

DNA Analytics, Greenbelt, Maryland 20770, United States.

Steven A Benner (SA)

Foundation for Applied Molecular Evolution, Alachua, Florida 32615, United States.

Jason D Kahn (JD)

Department of Chemistry & Biochemistry, University of Maryland, College Park, Maryland 20742, United States.
ORCID: 0000-0001-5060-4724

David H Mathews (DH)

Department of Biochemistry & Biophysics and Center for RNA Biology, University of Rochester Medical Center, Rochester, New York 14642, United States.
ORCID: 0000-0002-2907-6557

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Classifications MeSH

questionsmedicales.fr › Phénomènes génétiques › Structures génétiques › Conformation d'acide nucléique › Appariement de bases › DNA Structure Design Is Improved Using an...
questionsmedicales.fr › Phénomènes physiques › Thermodynamique › DNA Structure Design Is Improved Using an...
questionsmedicales.fr › Sciences de l'information › Méthodologies informatiques › Algorithmes › DNA Structure Design Is Improved Using an...
questionsmedicales.fr › Acides nucléiques, nucléotides et nucléosides › Acides nucléiques › ADN › DNA Structure Design Is Improved Using an...
questionsmedicales.fr › Acides nucléiques, nucléotides et nucléosides › Nucléotides › DNA Structure Design Is Improved Using an...