De Novo Variants in RAB11B Cause Various Degrees of Global Developmental Delay and Intellectual Disability in Children.

GTPase Genotype-phenotype correlation Neurodevelopmental disorder RAB11A RAB11B

Journal

Pediatric neurology
ISSN: 1873-5150
Titre abrégé: Pediatr Neurol
Pays: United States
ID NLM: 8508183

Informations de publication

Date de publication:
Nov 2023
Historique:
received: 16 05 2023
revised: 20 07 2023
accepted: 15 08 2023
pubmed: 21 9 2023
medline: 21 9 2023
entrez: 21 9 2023
Statut: ppublish

Résumé

RAB11B was described previously once with a severe form of intellectual disability. We aim at validation and delineation of the role of RAB11B in neurodevelopmental disorders. We present seven novel individuals with disease-associated variants in RAB11B when compared with the six cases described in the literature. We performed a cross-sectional analysis to identify the clinical spectrum and the core phenotype. Additionally, structural effects of the variants were assessed by molecular modeling. Seven distinct de novo missense variants were identified, three of them recurrent (p.(Gly21Arg), p.(Val22Met), and p.(Ala68Thr)). Molecular modeling suggests that those variants either affect the nucleotide binding (at amino acid positions 21, 22, 33, 68) or the interaction with effector molecules (at positions 72 and 75). Our data confirmed the main manifestations as neurodevelopmental disorder with intellectual disability (85%), muscular hypotonia (83%), structural brain anomalies (77%), and visual impairment (70%). Combined analysis indicates a genotype-phenotype correlation; variants impacting the nucleotide binding cause a severe phenotype with intellectual disability, and variants outside the binding pocket lead to a milder phenotype with epilepsy. We confirm that disease-associated missense variants in RAB11B cause a neurodevelopmental disorder and suggest a genotype-phenotype correlation based on the impact on nucleotide binding functionality of RAB11B.

Sections du résumé

BACKGROUND BACKGROUND
RAB11B was described previously once with a severe form of intellectual disability. We aim at validation and delineation of the role of RAB11B in neurodevelopmental disorders.
METHODS METHODS
We present seven novel individuals with disease-associated variants in RAB11B when compared with the six cases described in the literature. We performed a cross-sectional analysis to identify the clinical spectrum and the core phenotype. Additionally, structural effects of the variants were assessed by molecular modeling.
RESULTS RESULTS
Seven distinct de novo missense variants were identified, three of them recurrent (p.(Gly21Arg), p.(Val22Met), and p.(Ala68Thr)). Molecular modeling suggests that those variants either affect the nucleotide binding (at amino acid positions 21, 22, 33, 68) or the interaction with effector molecules (at positions 72 and 75). Our data confirmed the main manifestations as neurodevelopmental disorder with intellectual disability (85%), muscular hypotonia (83%), structural brain anomalies (77%), and visual impairment (70%). Combined analysis indicates a genotype-phenotype correlation; variants impacting the nucleotide binding cause a severe phenotype with intellectual disability, and variants outside the binding pocket lead to a milder phenotype with epilepsy.
CONCLUSIONS CONCLUSIONS
We confirm that disease-associated missense variants in RAB11B cause a neurodevelopmental disorder and suggest a genotype-phenotype correlation based on the impact on nucleotide binding functionality of RAB11B.

Identifiants

pubmed: 37734130
pii: S0887-8994(23)00281-3
doi: 10.1016/j.pediatrneurol.2023.08.023
pii:
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

164-171

Informations de copyright

Copyright © 2023 Elsevier Inc. All rights reserved.

Déclaration de conflit d'intérêts

Declaration of competing interest T.B.P., R.E.S., and I.M.W. are employees of GeneDx, LLC. S.C.J. is supported by NIH/National Heart Lung and Blood Institute (NHLBI) Pathway to Independence award R00HL143036-02, the Clinical & Translational Research Funding Program award (CTSA1405), the Hydrocephalus Association Innovator Award, and the Cerebral Palsy Alliance Research Foundation Project Grant. The authors declare no conflict of interest.

Auteurs

Natalie Ahmad (N)

Institute of Human Genetics, University of Leipzig Medical Center, Leipzig, Germany.

Walid Fazeli (W)

Department of Pediatric Neurology, University Hospital Bonn, Bonn, Germany.

Sophia Schließke (S)

Institute of Human Genetics, University of Leipzig Medical Center, Leipzig, Germany.

Gaetan Lesca (G)

Department of Medical Genetics, Lyon University Hospital, University of Lyon, UCB1, Lyon, France.

Zeynep Gokce-Samar (Z)

Department of Epileptology, Lyon University Hospital, Lyon, France.

Kedous Y Mekbib (KY)

Department of Neurosurgery, Yale University School of Medicine, New Haven, Connecticut; Department of Neurosurgery, Massachusetts General Hospital, Boston, Massachusetts.

Sheng Chih Jin (SC)

Department of Genetics, Washington University School of Medicine, St. Louis, Missouri.

Jennifer Burton (J)

University of Illinois College of Medicine, Peoria, Illinois.

George Hoganson (G)

University of Illinois College of Medicine, Peoria, Illinois.

Andrea Petersen (A)

Department of Genetics and Metabolism, Randall Children's Hospital, Portland, Oregon.

Sara Gracie (S)

Department of Genetics and Metabolism, Randall Children's Hospital, Portland, Oregon.

Leslie Granger (L)

Department of Genetics and Metabolism, Randall Children's Hospital, Portland, Oregon.

Enrika Bartels (E)

Institute of Clinical Genetics and Tumor Genetics, Bonn, Germany.

Henry Oppermann (H)

Institute of Human Genetics, University of Leipzig Medical Center, Leipzig, Germany.

Adam Kundishora (A)

Department of Neurosurgery, Yale University School of Medicine, New Haven, Connecticut.

Marianne Till (M)

Department of Medical Genetics, Lyon University Hospital, University of Lyon, UCB1, Lyon, France.

Clara Milleret-Pignot (C)

Department of Epileptology, Lyon University Hospital, Lyon, France.

Shane Dangerfield (S)

University of Utah, Salt Lake City, Utah.

David Viskochil (D)

University of Utah, Salt Lake City, Utah.

Katherine J Anderson (KJ)

University of Utah, Salt Lake City, Utah; Department of Pediatrics, University of Vermont Medical Center, Burlington, Vermont.

Timothy Blake Palculict (TB)

GeneDx, Gaithersburg, Maryland.

Rhonda E Schnur (RE)

GeneDx, Gaithersburg, Maryland.

Ingrid M Wentzensen (IM)

GeneDx, Gaithersburg, Maryland.

George E Tiller (GE)

Department of Genetics, Kaiser Permanente, Los Angeles, California.

Kristopher T Kahle (KT)

Department of Neurosurgery, Massachusetts General Hospital and Harvard Medical School, Boston, Massachusetts; Broad Institute of MIT and Harvard, Cambridge, Massachusetts.

Wolfram S Kunz (WS)

Department of Epileptology, University Hospital Bonn, Bonn, Germany.

Sebastian Burkart (S)

Institute of Human Genetics, University Hospital Heidelberg, Heidelberg, Germany.

Matias Simons (M)

Institute of Human Genetics, University Hospital Heidelberg, Heidelberg, Germany.

Heinrich Sticht (H)

Institute of Biochemistry, Friedrich-Alexander-Universität Erlangen-Nürnberg, Erlangen, Germany.

Rami Abou Jamra (R)

Institute of Human Genetics, University of Leipzig Medical Center, Leipzig, Germany.

Sonja Neuser (S)

Institute of Human Genetics, University of Leipzig Medical Center, Leipzig, Germany. Electronic address: sonja.neuser@medizin.uni-leipzig.de.

Classifications MeSH