Mass Spectrometry-Based Proteogenomics: New Therapeutic Opportunities for Precision Medicine.

drug resistance oncoproteomics phosphoproteomics proteogenomics single-cell proteomics

Journal

Annual review of pharmacology and toxicology
ISSN: 1545-4304
Titre abrégé: Annu Rev Pharmacol Toxicol
Pays: United States
ID NLM: 7607088

Informations de publication

Date de publication:
23 Jan 2024
Historique:
medline: 24 1 2024
pubmed: 22 9 2023
entrez: 22 9 2023
Statut: ppublish

Résumé

Proteogenomics refers to the integration of comprehensive genomic, transcriptomic, and proteomic measurements from the same samples with the goal of fully understanding the regulatory processes converting genotypes to phenotypes, often with an emphasis on gaining a deeper understanding of disease processes. Although specific genetic mutations have long been known to drive the development of multiple cancers, gene mutations alone do not always predict prognosis or response to targeted therapy. The benefit of proteogenomics research is that information obtained from proteins and their corresponding pathways provides insight into therapeutic targets that can complement genomic information by providing an additional dimension regarding the underlying mechanisms and pathophysiology of tumors. This review describes the novel insights into tumor biology and drug resistance derived from proteogenomic analysis while highlighting the clinical potential of proteogenomic observations and advances in technique and analysis tools.

Identifiants

pubmed: 37738504
doi: 10.1146/annurev-pharmtox-022723-113921
pmc: PMC10950354
mid: NIHMS1977019
doi:

Types de publication

Journal Article Review

Langues

eng

Sous-ensembles de citation

IM

Pagination

455-479

Subventions

Organisme : NCI NIH HHS
ID : F30 CA239335
Pays : United States
Organisme : NCI NIH HHS
ID : U01 CA271412
Pays : United States

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Auteurs

Sunil K Joshi (SK)

Knight Cancer Institute, Oregon Health & Science University, Portland, Oregon, USA; email: rodland@ohsu.edu.
Division of Hematology and Medical Oncology, Department of Medicine, Oregon Health & Science University, Portland, Oregon, USA.
Department of Medicine, Stanford University School of Medicine, Stanford, California, USA.

Paul Piehowski (P)

Pacific Northwest National Laboratory, Richland, Washington, USA.

Tao Liu (T)

Pacific Northwest National Laboratory, Richland, Washington, USA.

Sara J C Gosline (SJC)

Pacific Northwest National Laboratory, Richland, Washington, USA.

Jason E McDermott (JE)

Pacific Northwest National Laboratory, Richland, Washington, USA.
Department of Molecular Microbiology and Immunology, Oregon Health & Science University, Portland, Oregon, USA.

Brian J Druker (BJ)

Knight Cancer Institute, Oregon Health & Science University, Portland, Oregon, USA; email: rodland@ohsu.edu.
Division of Hematology and Medical Oncology, Department of Medicine, Oregon Health & Science University, Portland, Oregon, USA.

Elie Traer (E)

Knight Cancer Institute, Oregon Health & Science University, Portland, Oregon, USA; email: rodland@ohsu.edu.
Division of Hematology and Medical Oncology, Department of Medicine, Oregon Health & Science University, Portland, Oregon, USA.

Jeffrey W Tyner (JW)

Knight Cancer Institute, Oregon Health & Science University, Portland, Oregon, USA; email: rodland@ohsu.edu.
Division of Hematology and Medical Oncology, Department of Medicine, Oregon Health & Science University, Portland, Oregon, USA.
Department of Molecular Microbiology and Immunology, Oregon Health & Science University, Portland, Oregon, USA.

Anupriya Agarwal (A)

Knight Cancer Institute, Oregon Health & Science University, Portland, Oregon, USA; email: rodland@ohsu.edu.
Division of Hematology and Medical Oncology, Department of Medicine, Oregon Health & Science University, Portland, Oregon, USA.
Department of Molecular Microbiology and Immunology, Oregon Health & Science University, Portland, Oregon, USA.

Cristina E Tognon (CE)

Knight Cancer Institute, Oregon Health & Science University, Portland, Oregon, USA; email: rodland@ohsu.edu.
Division of Hematology and Medical Oncology, Department of Medicine, Oregon Health & Science University, Portland, Oregon, USA.

Karin D Rodland (KD)

Knight Cancer Institute, Oregon Health & Science University, Portland, Oregon, USA; email: rodland@ohsu.edu.
Pacific Northwest National Laboratory, Richland, Washington, USA.

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