A Large Open Access Dataset of Brain Metastasis 3D Segmentations with Clinical and Imaging Feature Information.


Journal

ArXiv
ISSN: 2331-8422
Titre abrégé: ArXiv
Pays: United States
ID NLM: 101759493

Informations de publication

Date de publication:
12 Sep 2023
Historique:
pubmed: 25 9 2023
medline: 25 9 2023
entrez: 25 9 2023
Statut: epublish

Résumé

Resection and whole brain radiotherapy (WBRT) are the standards of care for the treatment of patients with brain metastases (BM) but are often associated with cognitive side effects. Stereotactic radiosurgery (SRS) involves a more targeted treatment approach and has been shown to avoid the side effects associated with WBRT. However, SRS requires precise identification and delineation of BM. While many AI algorithms have been developed for this purpose, their clinical adoption has been limited due to poor model performance in the clinical setting. Major reasons for non-generalizable algorithms are the limitations in the datasets used for training the AI network. The purpose of this study was to create a large, heterogenous, annotated BM dataset for training and validation of AI models to improve generalizability. We present a BM dataset of 200 patients with pretreatment T1, T1 post-contrast, T2, and FLAIR MR images. The dataset includes contrast-enhancing and necrotic 3D segmentations on T1 post-contrast and whole tumor (including peritumoral edema) 3D segmentations on FLAIR. Our dataset contains 975 contrast-enhancing lesions, many of which are sub centimeter, along with clinical and imaging feature information. We used a streamlined approach to database-building leveraging a PACS-integrated segmentation workflow.

Identifiants

pubmed: 37744461
pii: 2309.05053
pmc: PMC10516117
pii:

Types de publication

Preprint

Langues

eng

Subventions

Organisme : NCI NIH HHS
ID : R01 CA206180
Pays : United States
Organisme : NCI NIH HHS
ID : R01 CA275188
Pays : United States
Organisme : NCI NIH HHS
ID : U01 CA242871
Pays : United States

Déclaration de conflit d'intérêts

M.S.A. has collaborations with Visage Imaging, Inc., Blue Earth Diagnostics, Telix, and AAA. She also has a KL2 TR00186 grant from the NCATS foundation. M.L. is an employee and stockholder of Visage Imaging, Inc., and unrelated to this work, receives funding from NIH/NCI R01 CA206180 and NIH/NCI R01 CA275188. W.H. and M.W. are employees and stockholders of Visage Imaging GmbH. K.B. is an employee of Visage Imaging GmbH. C.K. receives royalties from Primal Pictures 3D Informa, has grant funding from the NIH, and has received the Core Curriculum grant from the American Society of Head and Neck Radiology, all unrelated to this work. The remaining co-authors do not have any competing interests.

Auteurs

Divya Ramakrishnan (D)

Yale School of Medicine, Department of Radiology and Biomedical Imaging, New Haven, CT, USA.

Leon Jekel (L)

Yale School of Medicine, Department of Radiology and Biomedical Imaging, New Haven, CT, USA.
University of Essen School of Medicine, Essen, Germany.

Saahil Chadha (S)

Yale School of Medicine, Department of Radiology and Biomedical Imaging, New Haven, CT, USA.

Anastasia Janas (A)

Yale School of Medicine, Department of Radiology and Biomedical Imaging, New Haven, CT, USA.
Charité University School of Medicine, Berlin, Germany.

Harrison Moy (H)

Yale School of Medicine, Department of Radiology and Biomedical Imaging, New Haven, CT, USA.
Wesleyan University, Middletown, CT, USA.

Nazanin Maleki (N)

Yale School of Medicine, Department of Radiology and Biomedical Imaging, New Haven, CT, USA.

Matthew Sala (M)

Yale School of Medicine, Department of Radiology and Biomedical Imaging, New Haven, CT, USA.
Tulane University School of Medicine, New Orleans, LA, USA.

Manpreet Kaur (M)

Yale School of Medicine, Department of Radiology and Biomedical Imaging, New Haven, CT, USA.
Ludwig Maximilian University School of Medicine, Munich, Germany.

Gabriel Cassinelli Petersen (GC)

Yale School of Medicine, Department of Radiology and Biomedical Imaging, New Haven, CT, USA.
University of Göttingen School of Medicine, Göttingen, Germany.

Sara Merkaj (S)

Yale School of Medicine, Department of Radiology and Biomedical Imaging, New Haven, CT, USA.
Ulm University School of Medicine, Ulm, Germany.

Marc von Reppert (M)

Yale School of Medicine, Department of Radiology and Biomedical Imaging, New Haven, CT, USA.
University of Leipzig School of Medicine, Leipzig, Germany.

Ujjwal Baid (U)

Division of Computational Pathology, Department of Pathology & Laboratory Medicine, Indiana University School of Medicine, Indianapolis, IN, USA.
Department of Radiology and Department of Pathology & Laboratory Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.

Spyridon Bakas (S)

Division of Computational Pathology, Department of Pathology & Laboratory Medicine, Indiana University School of Medicine, Indianapolis, IN, USA.
Department of Radiology and Department of Pathology & Laboratory Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.

Claudia Kirsch (C)

Yale School of Medicine, Department of Radiology and Biomedical Imaging, New Haven, CT, USA.
School of Clinical Dentistry, University of Sheffield, Sheffield, England.
Diagnostic, Molecular and Interventional Radiology, Biomedical Engineering Imaging, Mount Sinai Hospital, New York City, NY, USA.

Melissa Davis (M)

Yale School of Medicine, Department of Radiology and Biomedical Imaging, New Haven, CT, USA.

Khaled Bousabarah (K)

Visage Imaging, GmbH, Berlin, Germany.

Wolfgang Holler (W)

Visage Imaging, GmbH, Berlin, Germany.

MingDe Lin (M)

Yale School of Medicine, Department of Radiology and Biomedical Imaging, New Haven, CT, USA.
Visage Imaging, Inc., San Diego, CA, USA.

Malte Westerhoff (M)

Visage Imaging, GmbH, Berlin, Germany.

Sanjay Aneja (S)

Department of Therapeutic Radiology, Yale School of Medicine, New Haven, CT, USA.
Center for Outcomes Research and Evaluation (CORE), Yale School of Medicine, New Haven, CT, USA.

Fatima Memon (F)

Yale School of Medicine, Department of Radiology and Biomedical Imaging, New Haven, CT, USA.

Mariam S Aboian (MS)

Yale School of Medicine, Department of Radiology and Biomedical Imaging, New Haven, CT, USA.

Classifications MeSH