The Past, Present, and Future of the Brain Imaging Data Structure (BIDS).

Journal

ArXiv
ISSN: 2331-8422
Titre abrégé: ArXiv
Pays: United States
ID NLM: 101759493

Informations de publication

Date de publication:
11 Sep 2023
Historique:
pubmed: 25 9 2023
medline: 25 9 2023
entrez: 25 9 2023
Statut: epublish

Résumé

The Brain Imaging Data Structure (BIDS) is a community-driven standard for the organization of data and metadata from a growing range of neuroscience modalities. This paper is meant as a history of how the standard has developed and grown over time. We outline the principles behind the project, the mechanisms by which it has been extended, and some of the challenges being addressed as it evolves. We also discuss the lessons learned through the project, with the aim of enabling researchers in other domains to learn from the success of BIDS.

Identifiants

PMID: 37744469 PMC: PMC10516110
pubmed: 37744469
pii: 2309.05768
pmc: PMC10516110
pii:

Types de publication

Preprint

Langues

eng

Subventions

Organisme : NIMH NIH HHS
ID : R24 MH117179
Pays : United States
Organisme : NIMH NIH HHS
ID : R01 MH126699
Pays : United States
Organisme : NIMH NIH HHS
ID : R24 MH114705
Pays : United States
Organisme : NIBIB NIH HHS
ID : P41 EB019936
Pays : United States
Organisme : NIMH NIH HHS
ID : R24 MH117295
Pays : United States
Organisme : NIMH NIH HHS
ID : R01 MH109682
Pays : United States
Organisme : Intramural NIH HHS
ID : ZIA MH002977
Pays : United States
Organisme : NIMH NIH HHS
ID : RF1 MH126700
Pays : United States

Déclaration de conflit d'intérêts

Declaration of Competing Interests GR is an employee of Invicro. No other authors have competing interests to declare.

Auteurs

Russell A Poldrack (RA)

Department of Psychology, Stanford University, Stanford, CA, USA.

Christopher J Markiewicz (CJ)

Department of Psychology, Stanford University, Stanford, CA, USA.

Stefan Appelhoff (S)

Max Planck Institute for Human Development, Berlin, Germany.

Yoni K Ashar (YK)

University of Colorado Anschutz Medical Campus, Aurora, CO, USA.

Tibor Auer (T)

School of Psychology, University of Surrey, Guildford, UK.

Sylvain Baillet (S)

McConnell Brain Imaging Centre, Montréal Neurological Institute, McGill University, Montréal, Canada.

Shashank Bansal (S)

Department of Bioengineering, University of California, San Diego, La Jolla, CA, USA.

Leandro Beltrachini (L)

Cardiff University Brain Research Imaging Centre (CUBRIC), School of Physics and Astronomy, Cardiff University, Wales, UK.

Christian G Bénar (CG)

Institut de Neurosciences des Systèmes, Marseille, France.

Giacomo Bertazzoli (G)

Neurophysiology Lab, IRCCS Istituto Centro San Giovanni di Dio Fatebenefratelli, Brescia, Italy.
Center for Mind/Brain Sciences - CIMeC, University of Trento, Rovereto, TN, Italy.
Brigham and Women's Hospital, Boston, MA, USA.
Massachusetts General Hospital, Boston, MA, USA.
Harvard Medical School, Boston, MA, USA.

Suyash Bhogawar (S)

Rackspace Technology, San Antonio, TX, USA.

Ross W Blair (RW)

Department of Psychology, Stanford University, Stanford, CA, USA.

Marta Bortoletto (M)

Neurophysiology Lab, IRCCS Istituto Centro San Giovanni di Dio Fatebenefratelli, Brescia, Italy.

Mathieu Boudreau (M)

NeuroPoly Lab, Polytechnique Montréal, Montréal, Quebec, Canada.

Teon L Brooks (TL)

Department of Psychology, Stanford University, Stanford, CA, USA.

Vince D Calhoun (VD)

Tri-institutional Center for Translational Research in Neuroimaging and Data Science (TReNDS), Georgia State, Georgia Tech, Emory, Atlanta, GA, USA.

Filippo Maria Castelli (FM)

European Laboratory for Non-Linear Spectroscopy (LENS), University of Florence, Sesto Fiorentino, Italy.
Bioretics srl, Cesena, Italy.

Patricia Clement (P)

Department of Medical Imaging, Ghent University Hospital, Ghent, Belgium.
Department of Diagnostic Sciences, Ghent University, Ghent, Belgium.

Alexander L Cohen (AL)

Department of Neurology, Boston Children's Hospital, Boston, MA, USA.

Julien Cohen-Adad (J)

NeuroPoly Lab, Polytechnique Montréal, Montréal, Quebec, Canada.

Sasha D'Ambrosio (S)

Dipartimento di Scienze della Salute dell'Università degli Studi di Milano, Milan, Italy.
Department of Clinical and Experimental Epilepsy, University College London, UK.

Gilles de Hollander (G)

Zurich Center for Neuroeconomics, Department of Economics, University of Zurich, Zurich, Switzerland.

María de la Iglesia-Vayá (M)

UMIB-FISABIO, Valencia, Spain.

Alejandro de la Vega (A)

The University of Texas at Austin, Austin, TX, USA.

Arnaud Delorme (A)

SCCN, University of California, San Diego,, La Jolla CA USA.

Orrin Devinsky (O)

Department of Neurology, NYU Langone Medical Center, New York, NY, USA.

Dejan Draschkow (D)

Department of Experimental Psychology, University of Oxford, Oxford, UK.

Eugene Paul Duff (EP)

UK Dementia Research Institute, Department of Brain Sciences, Imperial College London, London, UK.

Elizabeth DuPre (E)

Department of Psychology, Stanford University, Stanford, CA, USA.

Eric Earl (E)

Intramural Research Program, National Institute of Mental Health, Bethesda, MD, USA.

Oscar Esteban (O)

Department of Radiology, Lausanne University Hospital and University of Lausanne, Lausanne, Switzerland.

Franklin W Feingold (FW)

Department of Psychology, Stanford University, Stanford, CA, USA.

Guillaume Flandin (G)

Wellcome Centre for Human Neuroimaging, University College London, London, England, UK.

Anthony Galassi (A)

Intramural Research Program, National Institute of Mental Health, Bethesda, MD, USA.

Giuseppe Gallitto (G)

Center for Translational Neuro- and Behavioral Sciences, University Medicine Essen, Essen, Germany.
Department of Neurology, University Medicine Essen, Essen, Germany.

Melanie Ganz (M)

Department of Computer Science, University of Copenhagen, Copenhagen, Denmark.
Neurobiology Research Unit, Copenhagen University Hospital, Copenhagen, Denmark.

Rémi Gau (R)

Origamin Lab, The Neuro, McGill University, Montreal, Quebec, Canada.

James Gholam (J)

Cardiff University Brain Research Imaging Centre (CUBRIC), School of Psychology, Cardiff University, Wales, UK.

Satrajit S Ghosh (SS)

Massachusetts Institute of Technology, Cambridge, MA, USA.

Alessio Giacomel (A)

Department of Neuroimaging, Institute of Psychiatry, Psychology and Neuroscience, King's College London, London, England, UK.

Ashley G Gillman (AG)

The Australian e-Health Research Centre, Commonwealth Scientific and Industrial Research Organisation, Townsville, Queensland, Australia.

Padraig Gleeson (P)

Department of Neuroscience, Physiology and Pharmacology, University College London, London, England, UK.

Alexandre Gramfort (A)

Inria, CEA, Université Paris-Saclay, Palaiseau, France.

Samuel Guay (S)

Université de Montréal, Montréal, QC, Canada.

Giacomo Guidali (G)

Department of Psychology & NeuroMI - Milan Centre for Neuroscience, University of Milano-Bicocca, Milan, Italy.

Yaroslav O Halchenko (YO)

Center for Open Neuroscience, Department of Psychological and Brain Sciences, Dartmouth College, NH, USA.

Daniel A Handwerker (DA)

Intramural Research Program, National Institute of Mental Health, Bethesda, MD, USA.

Nell Hardcastle (N)

Department of Psychology, Stanford University, Stanford, CA, USA.

Peer Herholz (P)

McConnell Brain Imaging Centre, Montréal Neurological Institute, McGill University, Montréal, Quebec, Canada.

Dora Hermes (D)

Department of Physiology and Biomedical Engineering, Mayo Clinic, Rochester, MN, USA.

Christopher J Honey (CJ)

Department of Psychological & Brain Sciences, Johns Hopkins University, Baltimore, MD, USA.

Robert B Innis (RB)

Intramural Research Program, National Institute of Mental Health, Bethesda, MD, USA.

Horea-Ioan Ioanas (HI)

Center for Open Neuroscience, Department of Psychological and Brain Sciences, Dartmouth College, NH, USA.

Andrew Jahn (A)

Functional MRI Laboratory, University of Michigan, Ann Arbor, MI, USA.

Agah Karakuzu (A)

NeuroPoly Lab, Polytechnique Montréal, Montréal, Quebec, Canada.

David B Keator (DB)

Change Your Brain Change Your Life Foundation, Costa Mesa, CA, USA.
Amen Clinics, Costa Mesa, CA, USA.
Department of Psychiatry and Human Behavior, School of Medicine, University of California, Irvine, CA, USA.

Gregory Kiar (G)

Center for Data Analytics, Innovation, and Rigor, Child Mind Institute, New York, NY USA.

Balint Kincses (B)

Center for Translational Neuro- and Behavioral Sciences, University Medicine Essen, Essen, Germany.
Department of Neurology, University Medicine Essen, Essen, Germany.

Angela R Laird (AR)

Department of Physics, Florida International University, Miami, FL, USA.

Jonathan C Lau (JC)

Department of Clinical Neurological Sciences, Western University, London, Ontario, Canada.

Alberto Lazari (A)

Wellcome Centre for Integrative Neuroimaging, FMRIB, Nuffield Department of Clinical Neurosciences, University of Oxford, Oxford, UK.

Jon Haitz Legarreta (JH)

Department of Radiology, Brigham and Women's Hospital, Mass General Brigham/Harvard Medical School, Boston, MA, USA.

Adam Li (A)

Columbia University, New York, NY, USA.

Xiangrui Li (X)

Center for Cognitive and Behavioral Brain Imaging, The Ohio State University, Columbus, OH, USA.

Bradley C Love (BC)

University College London, London, UK.

Hanzhang Lu (H)

Johns Hopkins University School of Medicine, Baltimore, MD, USA.

Camille Maumet (C)

Inria, Univ Rennes, CNRS, Inserm, IRISA UMR 6074, Empenn ERL U 1228, Rennes, France.

Giacomo Mazzamuto (G)

National Research Council - National Institute of Optics (CNR-INO), Florence, Italy.

Steven L Meisler (SL)

Program in Speech and Hearing Bioscience and Technology, Harvard University, Cambridge, MA, USA.

Mark Mikkelsen (M)

Department of Radiology, Weill Cornell Medicine, New York, NY, USA.

Henk Mutsaerts (H)

Radiology and Nuclear Medicine, Vrije Universiteit Amsterdam, Amsterdam UMC location VUmc, Amsterdam, The Netherlands.
Amsterdam Neuroscience, Brain Imaging, Amsterdam, The Netherlands.

Thomas E Nichols (TE)

Big Data Institute, Li Ka Shing Centre for Health Information and Discovery, Nuffield Department of Population Health, University of Oxford, Oxford, UK.

Aki Nikolaidis (A)

Center for the Developing Brain, Child Mind Institute, New York, NY, USA.

Gustav Nilsonne (G)

Department of Clinical Neuroscience, Karolinska Institutet, Stockholm, Sweden.
Swedish National Data Service, Gothenburg University, Gothenburg, Sweden.

Guiomar Niso (G)

Instituto Cajal, CSIC, Madrid, Spain.

Martin Norgaard (M)

Intramural Research Program, National Institute of Mental Health, Bethesda, MD, USA.
Department of Computer Science, University of Copenhagen, Copenhagen, Denmark.

Thomas W Okell (TW)

Wellcome Centre for Integrative Neuroimaging, FMRIB, Nuffield Department of Clinical Neurosciences, University of Oxford, Oxford, UK.

Robert Oostenveld (R)

Donders Institute for Brain, Cognition and Behaviour, Radboud University Nijmegen, Nijmegen, The Netherlands.
NatMEG, Karolinska Institutet, Stockholm, Sweden.

Eduard Ort (E)

Heinrich Heine University, Department of Biological Psychology of Decision Making, Düsseldorf, Germany.

Patrick J Park (PJ)

Western University, London, Ontario, Canada.

Mateusz Pawlik (M)

Paris-Lodron-University of Salzburg, Department of Psychology, Centre for Cognitive Neuroscience, Salzburg, Austria.

Cyril R Pernet (CR)

Neurobiology Research Unit, Copenhagen University Hospital, Copenhagen, Denmark.

Franco Pestilli (F)

The University of Texas at Austin, Austin, TX, USA.

Jan Petr (J)

Helmholtz-Zentrum Dresden-Rossendorf, Institute of Radiopharmaceutical Cancer Research, Dresden, Germany.

Christophe Phillips (C)

GIGA CRC in vivo imaging, Liege University, Liege, Belgium.

Jean-Baptiste Poline (JB)

Neuro Data Science ORIGAMI Laboratory, McConnell Brain Imaging Centre, Faculty of Medicine, McGill University, Montréal, Canada.

Luca Pollonini (L)

Department of Engineering Technology, University of Houston, Houston, TX.
Basque Center on Cognition, Brain and Language, Donostia-San Sebastián, Spain.

Pradeep Reddy Raamana (PR)

University of Pittsburgh, Pittsburgh, PA, USA.

Petra Ritter (P)

Berlin Institute of Health at Charité, Universitätsmedizin Berlin, Charitéplatz 1, Berlin 10117, Germany.
Department of Neurology with Experimental Neurology, Charité, Universitätsmedizin Berlin, Corporate member of Freie Universität Berlin and Humboldt Universität zu Berlin, Charitéplatz 1, Berlin 10117, Germany.
Bernstein Focus State Dependencies of Learning and Bernstein Center for Computational Neuroscience, Berlin, Germany.
Einstein Center for Neuroscience Berlin, Charitéplatz 1, Berlin 10117, Germany.
Einstein Center Digital Future, Wilhelmstraße 67, Berlin 10117, Germany.

Gaia Rizzo (G)

Invicro, London, UK.
Division of Brain Sciences, Imperial College London, London, UK.

Kay A Robbins (KA)

University of Texas at San Antonio, San Antonio, TX, USA.

Alexander P Rockhill (AP)

Department of Neurosurgery, Oregon Health & Science University, Portland, OR, USA.

Christine Rogers (C)

McGill Centre for Integrative Neuroscience (MCIN), Montréal Neurological Institute, McGill University, Montréal, QC, Canada.

Ariel Rokem (A)

University of Washington, Department of Psychology and eScience Institute, Seattle, WA, USA.

Chris Rorden (C)

University of South Carolina, Department of Psychology, Columbia, SC, USA.

Alexandre Routier (A)

Inria, Institut du Cerveau - Paris Brain Institute, Paris, France.

Jose Manuel Saborit-Torres (JM)

UMIB-FISABIO, Valencia, Spain.

Taylor Salo (T)

Lifespan Informatics and Neuroimaging Center (PennLINC), Department of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.

Michael Schirner (M)

Bernstein Focus State Dependencies of Learning and Bernstein Center for Computational Neuroscience, Berlin, Germany.
Berlin Institute of Health (BIH) at Charité - Universitätsmedizin Berlin, Charitéplatz 1, 10117, Berlin, Germany.
Department of Neurology with Experimental Neurology, Charité, Universitätsmedizin Berlin, Corporate member of Freie Universität Berlin and Humboldt Universität zu Berlin, Charitéplatz 1, 10117, Berlin, Germany.
Einstein Center for Neuroscience Berlin, Charitéplatz 1, 10117, Berlin, Germany.
Einstein Center Digital Future, Wilhelmstraße 67, 10117, Berlin, Germany.

Robert E Smith (RE)

The Florey Institute of Neuroscience and Mental Health, Heidelberg, Victoria, Australia.
The Florey Department of Neuroscience and Mental Heath, The University of Melbourne, Parkville, Victoria, Australia.

Tamas Spisak (T)

Center for Translational Neuro- and Behavioral Sciences, University Medicine Essen, Essen, Germany.
Institute for Diagnostic and Interventional Radiology and Neuroradiology, University Medicine Essen, Essen, Germany.

Julia Sprenger (J)

Institut de Neurosciences de la Timone (INT), UMR7289, CNRS, Aix-Marseille Université, France.

Nicole C Swann (NC)

University of Oregon, Department of Human Physiology, Eugene, OR, USA.

Martin Szinte (M)

Institut de Neurosciences de la Timone (INT), UMR7289, CNRS, Aix-Marseille Université, France.

Sylvain Takerkart (S)

Institut de Neurosciences de la Timone (INT), UMR7289, CNRS, Aix-Marseille Université, France.

Bertrand Thirion (B)

Inria, CEA, Université Paris-Saclay, Palaiseau, France.

Adam G Thomas (AG)

Intramural Research Program, National Institute of Mental Health, Bethesda, MD, USA.

Sajjad Torabian (S)

University of California, Irvine, CA, USA.

Gael Varoquaux (G)

Inria, Université Paris Saclay, Saclay, France.

Bradley Voytek (B)

Department of Cognitive Science, Halıcıoğlu Data Science Institute, and Neurosciences Graduate Program, University of California, San Diego, La Jolla, CA, USA.

Julius Welzel (J)

Kiel University, Kiel, Germany.

Martin Wilson (M)

University of Birmingham, Centre for Human Brain Health and School of Psychology, Birmingham, UK.

Tal Yarkoni (T)

Google X. Mountain View, CA USA.

Krzysztof J Gorgolewski (KJ)

Department of Psychology, Stanford University, Stanford, CA, USA.

Classifications MeSH