Room temperature crystallography and X-ray spectroscopy of metalloenzymes.

Isopenicillin N synthase Metalloenzymes Photosystem II Protein crystallography X-ray emission spectroscopy X-ray free electron laser

Journal

Methods in enzymology
ISSN: 1557-7988
Titre abrégé: Methods Enzymol
Pays: United States
ID NLM: 0212271

Informations de publication

Date de publication:
2023
Historique:
medline: 27 9 2023
pubmed: 26 9 2023
entrez: 25 9 2023
Statut: ppublish

Résumé

The ultrashort (10s of femtoseconds) X-ray pulses generated by X-ray free electron lasers enable the measurement of X-ray diffraction and spectroscopic data from radiation-sensitive metalloenzymes at room temperature while mostly avoiding the effects of radiation damage usually encountered when performing such experiments at synchrotron sources. Here we discuss an approach to measure both X-ray emission and X-ray crystallographic data at the same time from the same sample volume. The droplet-on-tape setup described allows for efficient sample use and the integration of different reaction triggering options in order to conduct time-resolved studies with limited sample amounts. The approach is illustrated by two examples, photosystem II that catalyzes the light-driven oxidation of water to oxygen, and isopenicillin N synthase, an enzyme that catalyzes the double ring cyclization of a tripeptide precursor into the β-lactam isopenicillin and can be activated by oxygen exposure. We describe the necessary steps to obtain microcrystals of both proteins as well as the operation procedure for the drop-on-tape setup and details of the data acquisition and processing involved in this experiment. At the end, we present how the combination of time-resolved X-ray emission spectra and diffraction data can be used to improve the knowledge about the enzyme reaction mechanism.

Identifiants

pubmed: 37748830
pii: S0076-6879(23)00240-9
doi: 10.1016/bs.mie.2023.07.009
pii:
doi:

Substances chimiques

Metalloproteins 0
Oxygen S88TT14065

Types de publication

Journal Article Research Support, N.I.H., Extramural Research Support, U.S. Gov't, Non-P.H.S.

Langues

eng

Sous-ensembles de citation

IM

Pagination

307-348

Subventions

Organisme : NIGMS NIH HHS
ID : P41 GM139687
Pays : United States
Organisme : NIH HHS
ID : S10 OD023453
Pays : United States

Informations de copyright

Copyright © 2023. Published by Elsevier Inc.

Auteurs

Hiroki Makita (H)

Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, CA, United States.

Miao Zhang (M)

Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, CA, United States.

Junko Yano (J)

Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, CA, United States. Electronic address: JYano@lbl.gov.

Jan Kern (J)

Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, CA, United States. Electronic address: JFKern@lbl.gov.

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