Oomycete Soil Diversity Associated with

Phytophthora metabarcoding oomycete community plant pathogen soil community soil microbe

Journal

Journal of fungi (Basel, Switzerland)
ISSN: 2309-608X
Titre abrégé: J Fungi (Basel)
Pays: Switzerland
ID NLM: 101671827

Informations de publication

Date de publication:
14 Sep 2023
Historique:
received: 16 08 2023
revised: 07 09 2023
accepted: 09 09 2023
medline: 27 9 2023
pubmed: 27 9 2023
entrez: 27 9 2023
Statut: epublish

Résumé

This study aimed to determine the differences and drivers of oomycete diversity and community composition in alder- and birch-dominated park and natural forest soils of the Fennoscandian and Baltic countries of Estonia, Finland, Lithuania, Norway, and Sweden. For this, we sequenced libraries of PCR products generated from the DNA of 111 soil samples collected across a climate gradient using oomycete-specific primers on a PacBio high-throughput sequencing platform. We found that oomycete communities are most affected by temperature seasonality, annual mean temperature, and mean temperature of the warmest quarter. Differences in composition were partly explained by the higher diversity of Saprolegniales in Sweden and Norway, as both total oomycete and Saprolegniales richness decreased significantly at higher longitudes, potentially indicating the preference of this group of oomycetes for a more temperate maritime climate. None of the evaluated climatic variables significantly affected the richness of Pythiales or Peronosporales. Interestingly, the relative abundance and richness of Pythiales was higher at urban sites compared to forest sites, whereas the opposite was true for Saprolegniales. Additionally, this is the first report of

Identifiants

pubmed: 37755034
pii: jof9090926
doi: 10.3390/jof9090926
pmc: PMC10532727
pii:
doi:

Types de publication

Journal Article

Langues

eng

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Auteurs

Taavi Riit (T)

Institute of Forestry and Engineering, Estonian University of Life Sciences, F. R. Kreutzwaldi 5, 51006 Tartu, Estonia.

Michelle Cleary (M)

Southern Swedish Forest Research Centre, Swedish University of Agricultural Sciences, Sundsvägen 3, 230 53 Alnarp, Sweden.

Kalev Adamson (K)

Institute of Forestry and Engineering, Estonian University of Life Sciences, F. R. Kreutzwaldi 5, 51006 Tartu, Estonia.

Mimmi Blomquist (M)

Southern Swedish Forest Research Centre, Swedish University of Agricultural Sciences, Sundsvägen 3, 230 53 Alnarp, Sweden.

Daiva Burokienė (D)

Nature Research Centre, Akademijos Str. 2, LT-08412 Vilnius, Lithuania.

Diana Marčiulynienė (D)

Southern Swedish Forest Research Centre, Swedish University of Agricultural Sciences, Sundsvägen 3, 230 53 Alnarp, Sweden.
Institute of Forestry, Lithuanian Research Centre for Agriculture and Forestry, Liepų Str. 1, LT-53101 Girionys, Lithuania.

Jonàs Oliva (J)

Department of Agricultural and Forest Sciences and Engineering, University of Lleida, 25198 Lleida, Spain.
Joint Research Unit CTFC-Agrotecnio, 25198 Lleida, Spain.

Anna Poimala (A)

Natural Resources Institute Finland (LUKE), Latokartanonkaari 9, 00790 Helsinki, Finland.

Miguel Angel Redondo (MA)

Department of Forest Mycology and Plant Pathology, Swedish University of Agricultural Sciences, P.O. Box 7026, 750 07 Uppsala, Sweden.

Gunn Mari Strømeng (GM)

Norwegian Institute of Bioeconomy Research, NIBIO, Høgskoleveien 7, 1433 Ås, Norway.

Venche Talgø (V)

Norwegian Institute of Bioeconomy Research, NIBIO, Høgskoleveien 7, 1433 Ås, Norway.

Leho Tedersoo (L)

Mycology and Microbiology Center, University of Tartu, J. Liivi 2, 50409 Tartu, Estonia.

Iben Margrete Thomsen (IM)

Department of Geosciences and Natural Resource Management, University of Copenhagen, Rolighedsvej 23, 1958 Frederiksberg C, Denmark.

Anne Uimari (A)

Natural Resources Institute Finland (LUKE), Juntintie 154, 77600 Suonenjoki, Finland.

Johanna Witzell (J)

Southern Swedish Forest Research Centre, Swedish University of Agricultural Sciences, Sundsvägen 3, 230 53 Alnarp, Sweden.
Department of Forestry and Wood Technology, Linnaeus University, 351 95 Växjö, Sweden.

Rein Drenkhan (R)

Institute of Forestry and Engineering, Estonian University of Life Sciences, F. R. Kreutzwaldi 5, 51006 Tartu, Estonia.

Classifications MeSH