Plant Aquaporin Gating Is Reversed by Phosphorylation on Intracellular Loop D-Evidence from Molecular Dynamics Simulations.


Journal

International journal of molecular sciences
ISSN: 1422-0067
Titre abrégé: Int J Mol Sci
Pays: Switzerland
ID NLM: 101092791

Informations de publication

Date de publication:
07 Sep 2023
Historique:
received: 31 07 2023
revised: 14 08 2023
accepted: 24 08 2023
medline: 29 9 2023
pubmed: 28 9 2023
entrez: 28 9 2023
Statut: epublish

Résumé

Aquaporins (AQPs) constitute a wide and ancient protein family of transmembrane channels dedicated to the regulation of water exchange across biological membranes. In plants, higher numbers of AQP homologues have been conserved compared to other kingdoms of life such as in animals or in bacteria. As an illustration of this plant-specific functional diversity, plasma membrane intrinsic proteins (PIPs, i.e., a subfamily of plant AQPs) possess a long intracellular loop D, which can gate the channel by changing conformation as a function of the cellular environment. However, even though the closure of the AQP by loop D conformational changes is well described, the opening of the channel, on the other hand, is still misunderstood. Several studies have pointed to phosphorylation events as the trigger for the transition from closed- to open-channel states. Nonetheless, no clear answer has been obtained yet. Hence, in order to gain a more complete grasp of plant AQP regulation through this intracellular loop D gating, we investigated the opening of the channel in silico through molecular dynamics simulations of the crystallographic structure of

Identifiants

pubmed: 37762101
pii: ijms241813798
doi: 10.3390/ijms241813798
pmc: PMC10531447
pii:
doi:

Substances chimiques

Aquaporins 0
Membrane Proteins 0

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Références

J Mol Biol. 2003 Oct 17;333(2):279-93
pubmed: 14529616
Proteins. 2021 Jul;89(7):819-831
pubmed: 33576101
Handb Exp Pharmacol. 2009;(190):31-56
pubmed: 19096771
FEBS Lett. 2010 Jun 18;584(12):2580-8
pubmed: 20416297
J Chem Theory Comput. 2016 Jan 12;12(1):405-13
pubmed: 26631602
Science. 2002 Apr 19;296(5567):525-30
pubmed: 11964478
Phys Rev Lett. 2004 Nov 26;93(22):224501
pubmed: 15601094
Biochim Biophys Acta. 2014 May;1840(5):1468-81
pubmed: 24355433
Curr Opin Struct Biol. 2006 Aug;16(4):447-56
pubmed: 16837191
FEBS Lett. 2015 Nov 30;589(23):3508-15
pubmed: 26526614
Plant Physiol. 2001 Aug;126(4):1358-69
pubmed: 11500536
Curr Opin Struct Biol. 2005 Apr;15(2):176-83
pubmed: 15837176
Front Plant Sci. 2017 Aug 02;8:1336
pubmed: 28824672
FEBS Lett. 2005 Aug 15;579(20):4417-22
pubmed: 16061230
Nucleic Acids Res. 2004 Mar 19;32(5):1792-7
pubmed: 15034147
Proc Natl Acad Sci U S A. 2014 Jan 7;111(1):231-6
pubmed: 24367080
J Comput Chem. 2011 Jul 30;32(10):2319-27
pubmed: 21500218
Plant Sci. 2017 Nov;264:179-187
pubmed: 28969798
Physiol Rev. 2019 Jan 1;99(1):707-738
pubmed: 30516439
Biochim Biophys Acta. 2014 May;1840(5):1574-82
pubmed: 24246957
Bioinformatics. 2009 May 1;25(9):1189-91
pubmed: 19151095
Proc Natl Acad Sci U S A. 2008 Jan 29;105(4):1198-203
pubmed: 18202181
Nature. 2006 Feb 9;439(7077):688-94
pubmed: 16340961
Plant Cell Physiol. 2008 Aug;49(8):1196-208
pubmed: 18567892
Plant Physiol. 2014 Apr;164(4):1600-18
pubmed: 24449709
J Mol Biol. 2009 Apr 3;387(3):653-68
pubmed: 19302796
J Comput Chem. 2014 Oct 15;35(27):1997-2004
pubmed: 25130509
Nature. 2003 Sep 25;425(6956):393-7
pubmed: 14508488
Nat Methods. 2017 Jan;14(1):71-73
pubmed: 27819658

Auteurs

Robin Mom (R)

Laboratoire de Biologie et Modélisation de la Cellule, ENS de Lyon, University Claude Bernard, CNRS UMR 5239, INSERM U1210, 46 Allée d'Italie Site Jacques Monod, F-69007 Lyon, France.
Research Group on VestibularPathophysiology, CNRS, Unit GDR2074, F-13331 Marseille, France.

Stéphane Réty (S)

Laboratoire de Biologie et Modélisation de la Cellule, ENS de Lyon, University Claude Bernard, CNRS UMR 5239, INSERM U1210, 46 Allée d'Italie Site Jacques Monod, F-69007 Lyon, France.

Vincent Mocquet (V)

Laboratoire de Biologie et Modélisation de la Cellule, ENS de Lyon, University Claude Bernard, CNRS UMR 5239, INSERM U1210, 46 Allée d'Italie Site Jacques Monod, F-69007 Lyon, France.

Daniel Auguin (D)

Laboratoire de Biologie des Ligneux et des Grandes Cultures, Université d'Orléans, UPRES EA 1207, INRA-USC1328, F-45067 Orléans, France.

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Classifications MeSH