CC
AlphaFold2
SOCKET
Socket2
bioinformatics
coiled coil
protein assembly
protein design
protein engineering
protein-structure analysis and modeling
structural biology
α helix
Journal
Protein science : a publication of the Protein Society
ISSN: 1469-896X
Titre abrégé: Protein Sci
Pays: United States
ID NLM: 9211750
Informations de publication
Date de publication:
11 2023
11 2023
Historique:
revised:
10
09
2023
received:
16
06
2023
accepted:
23
09
2023
medline:
30
10
2023
pubmed:
28
9
2023
entrez:
28
9
2023
Statut:
ppublish
Résumé
α-Helical coiled coils are common tertiary and quaternary elements of protein structure. In coiled coils, two or more α helices wrap around each other to form bundles. This apparently simple structural motif can generate many architectures and topologies. Coiled coil-forming sequences can be predicted from heptad repeats of hydrophobic and polar residues, hpphppp, although this is not always reliable. Alternatively, coiled-coil structures can be identified using the program SOCKET, which finds knobs-into-holes (KIH) packing between side chains of neighboring helices. SOCKET also classifies coiled-coil architecture and topology, thus allowing sequence-to-structure relationships to be garnered. In 2009, we used SOCKET to create a relational database of coiled-coil structures, CC
Identifiants
pubmed: 37768271
doi: 10.1002/pro.4789
pmc: PMC10588367
doi:
Substances chimiques
Proteome
0
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
e4789Subventions
Organisme : Biotechnology and Biological Sciences Research Council
ID : BB/R00661X/1
Pays : United Kingdom
Organisme : European Research Council
ID : 340764
Pays : International
Organisme : European Research Council
ID : 787173
Pays : International
Organisme : European Research Council
ID : 819318
Pays : International
Organisme : Biotechnology and Biological Sciences Research Council
ID : BB/L01386X/1
Pays : United Kingdom
Informations de copyright
© 2023 The Authors. Protein Science published by Wiley Periodicals LLC on behalf of The Protein Society.
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