Mitogenomic analysis and phylogenetic relationships of Agrilinae: Insights into the evolutionary patterns of a diverse buprestid subfamily.


Journal

PloS one
ISSN: 1932-6203
Titre abrégé: PLoS One
Pays: United States
ID NLM: 101285081

Informations de publication

Date de publication:
2023
Historique:
received: 12 05 2023
accepted: 06 09 2023
medline: 28 9 2023
pubmed: 28 9 2023
entrez: 28 9 2023
Statut: epublish

Résumé

Agrilinae is the largest subfamily in Buprestidae, which includes the four tribes, namely Coraebini, Agrilini, Aphanisticini, and Tracheini. However, there is a need to verify the evolutionary relationships among the taxa in Buprestidae. Thus, to explore the phylogenetic position of Aphanisticini, the mitochondrial genomes of Endelus continentalis and Cantonius szechuanensis were sequenced using next-generation sequencing technology. Three other mitogenomes of agriline beetles, Agrilus discalis, Sambus kanssuensis, and Habroloma sp., were also sequenced for the phylogenetic analyses. The divergence time of Buprestidae was estimated based on the mitogenomes. The general features of the known mitogenomes of Agrilinae were compared, analyzed, and summarized. Out of these five species, S. kanssuensis had the shortest mitogenome length (15,411), while Habroloma sp. had the longest (16,273). The gene arrangement of the five new sequences was identical to that of the reported buprestid mitogenomes. The Ka/Ks ratios of Meliboeus (0.79) and Endelus (0.78) were significantly larger than those of the other agriline genera. The results of the phylogeny indicated that Aphanisticini was more closely related to Tracheini and that the genus Sambus separated from the base of the Agrilinae clade at about 130 Ma. Moreover, Aphanisticini and Tracheini diverged at around 26 Ma.

Identifiants

pubmed: 37768983
doi: 10.1371/journal.pone.0291820
pii: PONE-D-23-14552
pmc: PMC10538768
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

e0291820

Informations de copyright

Copyright: © 2023 Huang et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

Déclaration de conflit d'intérêts

The authors have declared that no competing interests exist.

Références

Genome Biol Evol. 2016 May 22;8(5):1411-26
pubmed: 27189999
Genome Biol Evol. 2015 Dec 08;8(1):161-75
pubmed: 26645679
Int J Biol Macromol. 2019 Dec 1;141:29-40
pubmed: 31470055
Syst Biol. 2012 May;61(3):539-42
pubmed: 22357727
Mol Phylogenet Evol. 2018 Jan;118:135-144
pubmed: 28986237
Genomics. 2019 Dec;111(6):1728-1735
pubmed: 30503746
Bioinformatics. 2009 Aug 1;25(15):1972-3
pubmed: 19505945
Insects. 2022 Jan 25;13(2):
pubmed: 35206698
Genes (Basel). 2022 Jun 16;13(6):
pubmed: 35741836
Mol Biol Evol. 2016 Jul;33(7):1870-4
pubmed: 27004904
Nucleic Acids Res. 1994 Nov 11;22(22):4673-80
pubmed: 7984417
Syst Biol. 2010 May;59(3):307-21
pubmed: 20525638
Bull Entomol Res. 2019 Apr;109(2):200-211
pubmed: 29784069
Insect Sci. 2022 Aug;29(4):1226-1238
pubmed: 34791791
Mol Biol Evol. 2000 Apr;17(4):540-52
pubmed: 10742046
Mitochondrial DNA B Resour. 2019 Jul 12;4(2):2407-2408
pubmed: 33365565
R Soc Open Sci. 2022 Mar 23;9(3):211771
pubmed: 35345430
Zookeys. 2023 Mar 29;1156:133-158
pubmed: 37234792
Syst Biol. 2009 Aug;58(4):381-94
pubmed: 20525592
Trends Genet. 2002 Sep;18(9):486
pubmed: 12175810
J Mol Evol. 1995 Sep;41(3):353-8
pubmed: 7563121
Bioinformatics. 2009 Sep 1;25(17):2286-8
pubmed: 19535536
Mol Biol Evol. 2015 Sep;32(9):2302-16
pubmed: 25957318
Zootaxa. 2019 Feb 25;4560(2):zootaxa.4560.2.7
pubmed: 31716584
Mol Phylogenet Evol. 2013 Nov;69(2):313-9
pubmed: 22982435
Bioinformatics. 2014 Aug 1;30(15):2114-20
pubmed: 24695404
BMC Bioinformatics. 2014 Aug 30;15:294
pubmed: 25176556
Nucleic Acids Res. 1997 Mar 1;25(5):955-64
pubmed: 9023104
Genes (Basel). 2021 Aug 25;12(9):
pubmed: 34573288
Mol Ecol Resour. 2020 Jan;20(1):348-355
pubmed: 31599058
BMC Evol Biol. 2010 Oct 07;10:300
pubmed: 20929580
Sci Rep. 2015 Feb 23;5:8527
pubmed: 25704094
Zookeys. 2022 Apr 06;1092:195-212
pubmed: 35586288
Mitochondrial DNA B Resour. 2017 Feb 23;2(1):134-135
pubmed: 33473743
Mol Biol Evol. 2012 Aug;29(8):1969-73
pubmed: 22367748
Genomics. 2020 Nov;112(6):4435-4441
pubmed: 32745503
Zookeys. 2023 Jan 13;1139:165-182
pubmed: 36761279
Bioinformatics. 2012 Jun 15;28(12):1647-9
pubmed: 22543367

Auteurs

Xuyan Huang (X)

College of Life Sciences, China West Normal University, Nanchong, Sichuan, China.

Zhonghua Wei (Z)

College of Life Sciences, China West Normal University, Nanchong, Sichuan, China.

Jiawei Lu (J)

Mental Health Center of Nanchong, Nanchong, Sichuan, China.

Aimin Shi (A)

College of Life Sciences, China West Normal University, Nanchong, Sichuan, China.

Classifications MeSH