Systematic Literature Review of Machine Learning Algorithms Using Pretherapy Radiologic Imaging for Glioma Molecular Subtype Prediction.


Journal

AJNR. American journal of neuroradiology
ISSN: 1936-959X
Titre abrégé: AJNR Am J Neuroradiol
Pays: United States
ID NLM: 8003708

Informations de publication

Date de publication:
10 2023
Historique:
received: 27 02 2023
accepted: 01 08 2023
pmc-release: 01 10 2024
medline: 6 10 2023
pubmed: 29 9 2023
entrez: 28 9 2023
Statut: ppublish

Résumé

The molecular profile of gliomas is a prognostic indicator for survival, driving clinical decision-making for treatment. Pathology-based molecular diagnosis is challenging because of the invasiveness of the procedure, exclusion from neoadjuvant therapy options, and the heterogeneous nature of the tumor. We performed a systematic review of algorithms that predict molecular subtypes of gliomas from MR Imaging. Data sources were Ovid Embase, Ovid MEDLINE, Cochrane Central Register of Controlled Trials, Web of Science. Per the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) guidelines, 12,318 abstracts were screened and 1323 underwent full-text review, with 85 articles meeting the inclusion criteria. We compared prediction results from different machine learning approaches for predicting molecular subtypes of gliomas. Bias analysis was conducted for each study, following the Prediction model Risk Of Bias Assessment Tool (PROBAST) guidelines. Isocitrate dehydrogenase mutation status was reported with an area under the curve and accuracy of 0.88 and 85% in internal validation and 0.86 and 87% in limited external validation data sets, respectively. For the prediction of The low number of external validation and studies with incomplete data resulted in unequal data analysis. Comparing the best prediction pipelines of each study may introduce bias. While the high area under the curve and accuracy for the prediction of molecular subtypes of gliomas are reported in internal and external validation data sets, limited use of external validation and the increased risk of bias in all articles may present obstacles for clinical translation of these techniques.

Sections du résumé

BACKGROUND
The molecular profile of gliomas is a prognostic indicator for survival, driving clinical decision-making for treatment. Pathology-based molecular diagnosis is challenging because of the invasiveness of the procedure, exclusion from neoadjuvant therapy options, and the heterogeneous nature of the tumor.
PURPOSE
We performed a systematic review of algorithms that predict molecular subtypes of gliomas from MR Imaging.
DATA SOURCES
Data sources were Ovid Embase, Ovid MEDLINE, Cochrane Central Register of Controlled Trials, Web of Science.
STUDY SELECTION
Per the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) guidelines, 12,318 abstracts were screened and 1323 underwent full-text review, with 85 articles meeting the inclusion criteria.
DATA ANALYSIS
We compared prediction results from different machine learning approaches for predicting molecular subtypes of gliomas. Bias analysis was conducted for each study, following the Prediction model Risk Of Bias Assessment Tool (PROBAST) guidelines.
DATA SYNTHESIS
Isocitrate dehydrogenase mutation status was reported with an area under the curve and accuracy of 0.88 and 85% in internal validation and 0.86 and 87% in limited external validation data sets, respectively. For the prediction of
LIMITATIONS
The low number of external validation and studies with incomplete data resulted in unequal data analysis. Comparing the best prediction pipelines of each study may introduce bias.
CONCLUSIONS
While the high area under the curve and accuracy for the prediction of molecular subtypes of gliomas are reported in internal and external validation data sets, limited use of external validation and the increased risk of bias in all articles may present obstacles for clinical translation of these techniques.

Identifiants

pubmed: 37770204
pii: ajnr.A8000
doi: 10.3174/ajnr.A8000
pmc: PMC10549943
doi:

Types de publication

Systematic Review Journal Article Research Support, N.I.H., Extramural

Langues

eng

Sous-ensembles de citation

IM

Pagination

1126-1134

Subventions

Organisme : NCATS NIH HHS
ID : KL2 TR001862
Pays : United States
Organisme : NCI NIH HHS
ID : R01 CA206180
Pays : United States
Organisme : NCATS NIH HHS
ID : UL1 TR001863
Pays : United States

Informations de copyright

© 2023 by American Journal of Neuroradiology.

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Auteurs

Jan Lost (J)

From the Department of Radiology and Biomedical Imaging (J.L., T.V., L.J., M.v.R., N.T., S.M., G.C.P., R.B., A.G., M.A.H., H.S., W.B., B.V.M.-N., A.A., M.L., M.A.), Yale School of Medicine, New Haven, Connecticut.
Department of Neurosurgery (J.L., M.S.), Heinrich-Heine-University, Duesseldorf, Germany.

Tej Verma (T)

From the Department of Radiology and Biomedical Imaging (J.L., T.V., L.J., M.v.R., N.T., S.M., G.C.P., R.B., A.G., M.A.H., H.S., W.B., B.V.M.-N., A.A., M.L., M.A.), Yale School of Medicine, New Haven, Connecticut.

Leon Jekel (L)

From the Department of Radiology and Biomedical Imaging (J.L., T.V., L.J., M.v.R., N.T., S.M., G.C.P., R.B., A.G., M.A.H., H.S., W.B., B.V.M.-N., A.A., M.L., M.A.), Yale School of Medicine, New Haven, Connecticut.

Marc von Reppert (M)

From the Department of Radiology and Biomedical Imaging (J.L., T.V., L.J., M.v.R., N.T., S.M., G.C.P., R.B., A.G., M.A.H., H.S., W.B., B.V.M.-N., A.A., M.L., M.A.), Yale School of Medicine, New Haven, Connecticut.

Niklas Tillmanns (N)

From the Department of Radiology and Biomedical Imaging (J.L., T.V., L.J., M.v.R., N.T., S.M., G.C.P., R.B., A.G., M.A.H., H.S., W.B., B.V.M.-N., A.A., M.L., M.A.), Yale School of Medicine, New Haven, Connecticut.

Sara Merkaj (S)

From the Department of Radiology and Biomedical Imaging (J.L., T.V., L.J., M.v.R., N.T., S.M., G.C.P., R.B., A.G., M.A.H., H.S., W.B., B.V.M.-N., A.A., M.L., M.A.), Yale School of Medicine, New Haven, Connecticut.

Gabriel Cassinelli Petersen (GC)

From the Department of Radiology and Biomedical Imaging (J.L., T.V., L.J., M.v.R., N.T., S.M., G.C.P., R.B., A.G., M.A.H., H.S., W.B., B.V.M.-N., A.A., M.L., M.A.), Yale School of Medicine, New Haven, Connecticut.

Ryan Bahar (R)

From the Department of Radiology and Biomedical Imaging (J.L., T.V., L.J., M.v.R., N.T., S.M., G.C.P., R.B., A.G., M.A.H., H.S., W.B., B.V.M.-N., A.A., M.L., M.A.), Yale School of Medicine, New Haven, Connecticut.

Ayyüce Gordem (A)

From the Department of Radiology and Biomedical Imaging (J.L., T.V., L.J., M.v.R., N.T., S.M., G.C.P., R.B., A.G., M.A.H., H.S., W.B., B.V.M.-N., A.A., M.L., M.A.), Yale School of Medicine, New Haven, Connecticut.

Muhammad A Haider (MA)

From the Department of Radiology and Biomedical Imaging (J.L., T.V., L.J., M.v.R., N.T., S.M., G.C.P., R.B., A.G., M.A.H., H.S., W.B., B.V.M.-N., A.A., M.L., M.A.), Yale School of Medicine, New Haven, Connecticut.

Harry Subramanian (H)

From the Department of Radiology and Biomedical Imaging (J.L., T.V., L.J., M.v.R., N.T., S.M., G.C.P., R.B., A.G., M.A.H., H.S., W.B., B.V.M.-N., A.A., M.L., M.A.), Yale School of Medicine, New Haven, Connecticut.

Waverly Brim (W)

From the Department of Radiology and Biomedical Imaging (J.L., T.V., L.J., M.v.R., N.T., S.M., G.C.P., R.B., A.G., M.A.H., H.S., W.B., B.V.M.-N., A.A., M.L., M.A.), Yale School of Medicine, New Haven, Connecticut.

Ichiro Ikuta (I)

Department of Radiology (I.I.), Mayo Clinic Arizona, Phoenix, Arizona.

Antonio Omuro (A)

Department of Neurology and Yale Cancer Center (A.O.), Yale School of Medicine, New Haven, Connecticut.

Gian Marco Conte (GM)

Department of Radiology (G.M.C.), Mayo Clinic, Rochester, Minesotta.

Bernadette V Marquez-Nostra (BV)

From the Department of Radiology and Biomedical Imaging (J.L., T.V., L.J., M.v.R., N.T., S.M., G.C.P., R.B., A.G., M.A.H., H.S., W.B., B.V.M.-N., A.A., M.L., M.A.), Yale School of Medicine, New Haven, Connecticut.

Arman Avesta (A)

From the Department of Radiology and Biomedical Imaging (J.L., T.V., L.J., M.v.R., N.T., S.M., G.C.P., R.B., A.G., M.A.H., H.S., W.B., B.V.M.-N., A.A., M.L., M.A.), Yale School of Medicine, New Haven, Connecticut.

Khaled Bousabarah (K)

Visage Imaging Inc (K.B., M.L.), San Diego, California.

Ali Nabavizadeh (A)

Department of Radiology (A.N.), Perelman School of Medicine, Hospital of University of Pennsylvania, University of Pennsylvania, Philadelphia, Pennsylvania.

Anahita Fathi Kazerooni (AF)

Department of Neurosurgery (A.F.K.), Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania.
Division of Neurosurgery (A.F.K.), Children's Hospital of Philadelphia, Philadelphia, Pennsylvania.
Center for Data-Driven Discovery (A.F.K.), Children's Hospital of Philadelphia, Philadelphia, Pennsylvania.

Sanjay Aneja (S)

Department of Therapeutic Radiology (S.A), Yale School of Medicine, New Haven, Connecticut.

Spyridon Bakas (S)

Center for Biomedical Image Computing and Analytics (S.B.), Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania.
Richards Medical Research Laboratories (S.B.), Philadelphia, Pennsylvania.
Department of Radiology (S.B.), Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania.

MingDe Lin (M)

From the Department of Radiology and Biomedical Imaging (J.L., T.V., L.J., M.v.R., N.T., S.M., G.C.P., R.B., A.G., M.A.H., H.S., W.B., B.V.M.-N., A.A., M.L., M.A.), Yale School of Medicine, New Haven, Connecticut.
Visage Imaging Inc (K.B., M.L.), San Diego, California.

Michael Sabel (M)

Department of Neurosurgery (J.L., M.S.), Heinrich-Heine-University, Duesseldorf, Germany.

Mariam Aboian (M)

From the Department of Radiology and Biomedical Imaging (J.L., T.V., L.J., M.v.R., N.T., S.M., G.C.P., R.B., A.G., M.A.H., H.S., W.B., B.V.M.-N., A.A., M.L., M.A.), Yale School of Medicine, New Haven, Connecticut mariam.aboian@yale.edu.

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