Phosphorylation mediated regulation of RNA splicing in plants.

RNA splicing phosphorylation protein kinases proteomics regulation

Journal

Frontiers in plant science
ISSN: 1664-462X
Titre abrégé: Front Plant Sci
Pays: Switzerland
ID NLM: 101568200

Informations de publication

Date de publication:
2023
Historique:
received: 28 06 2023
accepted: 22 08 2023
medline: 2 10 2023
pubmed: 2 10 2023
entrez: 2 10 2023
Statut: epublish

Résumé

For the past two decades, the study of alternative splicing (AS) and its involvement in plant development and stress response has grown in popularity. Only recently however, has the focus shifted to the study of how AS regulation (or lack-thereof) affects downstream mRNA and protein landscapes and how these AS regulatory events impact plant development and stress tolerance. In humans, protein phosphorylation represents one of the predominant mechanisms by which AS is regulated and thus the protein kinases governing these phosphorylation events are of interest for further study. Large-scale phosphoproteomic studies in plants have consistently found that RNA splicing-related proteins are extensively phosphorylated, however, the signaling pathways involved in AS regulation have not been resolved. In this mini-review, we summarize our current knowledge of the three major splicing-related protein kinase families in plants that are suggested to mediate AS phospho-regulation and draw comparisons to their metazoan orthologs. We also summarize and contextualize the phosphorylation events identified as occurring on splicing-related protein families to illustrate the high degree to which splicing-related proteins are modified, placing a new focus on elucidating the impacts of AS at the protein and PTM-level.

Identifiants

pubmed: 37780493
doi: 10.3389/fpls.2023.1249057
pmc: PMC10539000
doi:

Types de publication

Journal Article Review

Langues

eng

Pagination

1249057

Informations de copyright

Copyright © 2023 Rodriguez Gallo and Uhrig.

Déclaration de conflit d'intérêts

The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.

Références

New Phytol. 2015 Apr;206(1):281-294
pubmed: 25406502
RNA Biol. 2021 Oct;18(10):1390-1407
pubmed: 33406982
Cell. 1977 May;11(1):127-38
pubmed: 872217
Proc Natl Acad Sci U S A. 2011 May 17;108(20):8233-8
pubmed: 21536904
Int J Mol Sci. 2019 Feb 10;20(3):
pubmed: 30744200
Biochem J. 2015 Mar 1;466(2):311-22
pubmed: 25529026
Genome Res. 2012 Jun;22(6):1184-95
pubmed: 22391557
Cancer Res. 2010 Feb 15;70(4):1679-88
pubmed: 20145135
Science. 2013 Nov 1;342(6158):628-32
pubmed: 24030492
J Biol Chem. 2010 Jun 4;285(23):17789-97
pubmed: 20371611
Mol Cell Biol. 2002 Jul;22(14):5141-56
pubmed: 12077342
Plant Cell. 2016 Sep;28(9):2197-2211
pubmed: 27495811
Mol Cells. 2017 Jan;40(1):1-9
pubmed: 28152302
Cells. 2021 Mar 30;10(4):
pubmed: 33808326
Gene. 2016 Jul 15;586(1):41-7
pubmed: 27041240
Plant Biotechnol J. 2021 Feb;19(2):227-229
pubmed: 33010087
Nat Rev Mol Cell Biol. 2017 Jul;18(7):437-451
pubmed: 28488700
Cancer Lett. 2017 Jun 28;396:53-65
pubmed: 28315432
Mol Cell. 2016 Jul 21;63(2):218-228
pubmed: 27397683
Nat Struct Mol Biol. 2010 Feb;17(2):216-21
pubmed: 20118938
PLoS Genet. 2017 Mar 8;13(3):e1006663
pubmed: 28273088
Nucleic Acids Res. 2012 Dec;40(22):11240-55
pubmed: 23042250
Mol Neurobiol. 2021 Feb;58(2):631-646
pubmed: 33000450
Cancer Cell. 2015 May 11;27(5):617-30
pubmed: 25965569
Plant Cell Physiol. 2007 Jul;48(7):1036-49
pubmed: 17556373
Hum Genet. 2016 Aug;135(8):851-67
pubmed: 27215579
Mol Plant. 2016 Apr 4;9(4):621-3
pubmed: 26658240
Protein Cell. 2019 Jun;10(6):405-416
pubmed: 30267374
Plant Cell Physiol. 2015 Apr;56(4):594-604
pubmed: 25432974
EMBO J. 1991 Feb;10(2):317-25
pubmed: 1825055
Biomed Res Int. 2015;2015:150514
pubmed: 26273588
Plant Cell. 2006 Nov;18(11):3218-34
pubmed: 17114353
Plant Cell. 2010 Aug;22(8):2781-95
pubmed: 20798328
Plant Physiol. 2018 Apr;176(4):2886-2903
pubmed: 29496883
Plant Physiol. 2020 Jan;182(1):243-254
pubmed: 31501299
Plant Cell. 2016 Nov;28(11):2715-2734
pubmed: 27803310
Mol Plant. 2016 Dec 5;9(12):1647-1659
pubmed: 27815142
Cell. 2004 Dec 17;119(6):831-45
pubmed: 15607979
Proc Natl Acad Sci U S A. 2017 Mar 28;114(13):E2644-E2653
pubmed: 28289210
Plant Physiol. 2016 Feb;170(2):1000-13
pubmed: 26697894
Cell. 2017 Dec 14;171(7):1545-1558.e18
pubmed: 29153836
RNA Biol. 2021 Oct 15;18(sup1):318-336
pubmed: 34291726
Front Plant Sci. 2019 May 08;10:606
pubmed: 31134122
Plant Mol Biol. 2000 Mar;42(4):571-81
pubmed: 10809003
RNA. 2019 May;25(5):630-644
pubmed: 30796096
J Virol. 2020 Jan 17;94(3):
pubmed: 31723020
Front Genet. 2022 Aug 05;13:926070
pubmed: 35991577
Plant Cell. 2014 Sep;26(9):3472-87
pubmed: 25248552
EMBO J. 2001 Oct 15;20(20):5748-58
pubmed: 11598017
Mol Cell. 2012 Jun 29;46(6):871-83
pubmed: 22749400
iScience. 2022 Mar 11;25(4):104051
pubmed: 35345463
Science. 2014 Apr 25;344(6182):427-30
pubmed: 24763593
Elife. 2015 Jan 02;4:
pubmed: 25555158
Nucleic Acids Res. 2016 Jun 20;44(11):5330-43
pubmed: 27185895
Mol Cell. 2005 Jul 1;19(1):65-75
pubmed: 15989965
Structure. 2013 Dec 3;21(12):2162-74
pubmed: 24183573
Mol Cell. 2012 Aug 10;47(3):422-33
pubmed: 22727668
RNA. 2013 Jan;19(1):96-102
pubmed: 23175589
Front Plant Sci. 2020 Dec 01;11:596354
pubmed: 33335535
Front Genet. 2019 Sep 06;10:804
pubmed: 31552099
Nucleic Acids Res. 2019 May 21;47(9):4663-4683
pubmed: 30916345
Nucleic Acids Res. 2006 Jun 28;34(11):3267-78
pubmed: 16807317
Plant Cell. 2010 Sep;22(9):2926-9
pubmed: 20884799
Curr Opin Plant Biol. 2015 Oct;27:97-103
pubmed: 26190743
Mol Plant. 2022 Nov 7;15(11):1696-1709
pubmed: 36016495
Nucleic Acids Res. 2022 Jan 7;50(D1):D1491-D1499
pubmed: 34718741
J Cell Biol. 2017 Jul 3;216(7):1993-2009
pubmed: 28592444
Mol Cell. 2020 Apr 2;78(1):57-69.e4
pubmed: 32059760
J Biophys Biochem Cytol. 1956 Jul 25;2(4 Suppl):393-6
pubmed: 13357575
Open Biol. 2019 Mar 29;9(3):180239
pubmed: 30836866
New Phytol. 2021 Jun;230(5):1731-1745
pubmed: 33586137
Plant J. 2019 Aug;99(4):752-762
pubmed: 31004550
Biochem J. 2018 Feb 14;475(3):677-690
pubmed: 29335301
PLoS One. 2017 Feb 6;12(2):e0171328
pubmed: 28166275
Plant Mol Biol. 2019 Jul;100(4-5):379-390
pubmed: 30968308
Front Plant Sci. 2019 Jun 12;10:708
pubmed: 31244866
Wiley Interdiscip Rev RNA. 2012 Jan-Feb;3(1):1-12
pubmed: 21898828
ACS Chem Biol. 2022 Jun 17;17(6):1293-1307
pubmed: 35639849
Plant Physiol. 2010 May;153(1):273-84
pubmed: 20237019
Mol Biol Cell. 2006 Feb;17(2):876-85
pubmed: 16319169
Plant J. 2021 Feb;105(4):924-941
pubmed: 33184936
Plant Physiol. 2020 Mar;182(3):1510-1526
pubmed: 31857423
J Biol Chem. 1996 Nov 1;271(44):27299-303
pubmed: 8910305
Nature. 2010 Dec 2;468(7324):664-8
pubmed: 20881964
Biochemistry. 2012 Aug 21;51(33):6584-94
pubmed: 22839969
J Mol Biol. 2011 Jul 1;410(1):131-45
pubmed: 21600902
Chromosoma. 2013 Jun;122(3):191-207
pubmed: 23525660
Plant Cell. 2018 Jul;30(7):1424-1444
pubmed: 29764987
BMC Genomics. 2017 Mar 27;18(1):260
pubmed: 28347276
Genetics. 2018 Dec;210(4):1267-1285
pubmed: 30297453
New Phytol. 2023 Jun;238(5):1889-1907
pubmed: 36942955
iScience. 2021 Apr 20;24(5):102423
pubmed: 33997701
J Biol Chem. 2000 Mar 17;275(11):7950-7
pubmed: 10713112
Sci Rep. 2015 Aug 18;5:13208
pubmed: 26282582
Plant Cell Environ. 2019 May;42(5):1657-1673
pubmed: 30549047
Mol Cell. 2018 Feb 15;69(4):648-663.e7
pubmed: 29398447
Plant Cell Physiol. 2019 Sep 1;60(9):1974-1985
pubmed: 31368506
Plant Cell. 2016 Jan;28(1):55-73
pubmed: 26721863
Int J Mol Sci. 2022 Jul 01;23(13):
pubmed: 35806374
Nucleic Acids Res. 2022 Aug 12;50(14):8262-8278
pubmed: 35871302
BMC Genomics. 2014 Jun 04;15:431
pubmed: 24897929
Front Plant Sci. 2019 Sep 10;10:1076
pubmed: 31552074
Comput Struct Biotechnol J. 2020 Dec 24;19:183-195
pubmed: 33425250
Plant Physiol. 2017 Jan;173(1):36-46
pubmed: 27920161
Cell. 2012 Jul 6;150(1):53-64
pubmed: 22770214
Genome Res. 2010 Jan;20(1):45-58
pubmed: 19858364
Mol Cell. 2005 Oct 7;20(1):77-89
pubmed: 16209947
Nature. 1966 Jun 25;210(5043):1319-22
pubmed: 6007114
New Phytol. 2021 May;230(3):938-942
pubmed: 33474759
J Biol Chem. 2004 Mar 26;279(13):12812-8
pubmed: 14703514
Proc Natl Acad Sci U S A. 2003 Oct 28;100(22):12601-6
pubmed: 14555757
Wiley Interdiscip Rev RNA. 2015 Jan-Feb;6(1):93-110
pubmed: 25155147
Nat Commun. 2021 Jul 23;12(1):4507
pubmed: 34301951
Genes Dev. 1994 May 15;8(10):1160-73
pubmed: 7926721
Plant Cell. 2006 Jan;18(1):146-58
pubmed: 16339852
Genome Biol. 2007;8(4):R64
pubmed: 17456239
Signal Transduct Target Ther. 2021 Mar 5;6(1):108
pubmed: 33664238
Mol Syst Biol. 2015 Jan 19;11(1):776
pubmed: 25600997
Genes Dev. 2016 Mar 1;30(5):553-66
pubmed: 26944680
Plant Cell Rep. 2017 Jul;36(7):1113-1123
pubmed: 28432478
Trends Plant Sci. 2021 Nov;26(11):1153-1170
pubmed: 34334317
Cell Death Dis. 2016 Jun 09;7(6):e2262
pubmed: 27277684
Cell Rep. 2013 Apr 25;3(4):1306-20
pubmed: 23602568
Cell Death Differ. 2016 Dec;23(12):1919-1929
pubmed: 27689872
Genes (Basel). 2021 Sep 21;12(9):
pubmed: 34573439
Oncogene. 2018 Jan 11;37(2):174-184
pubmed: 28892043
Plant Physiol. 2021 Jun 11;186(2):1318-1335
pubmed: 33705553
Nat Rev Mol Cell Biol. 2002 Mar;3(3):195-205
pubmed: 11994740
Genes Dev. 2010 Jun 1;24(11):1073-4
pubmed: 20516191
Nat Rev Mol Cell Biol. 2005 May;6(5):386-98
pubmed: 15956978
FEBS J. 2011 Feb;278(4):587-97
pubmed: 21205204
EMBO J. 1997 Sep 15;16(18):5752-63
pubmed: 9312033
BMC Plant Biol. 2022 Oct 22;22(1):496
pubmed: 36273172
J Biol Chem. 2010 Apr 30;285(18):13797-806
pubmed: 20200159
Nat Commun. 2019 Aug 7;10(1):3556
pubmed: 31391465

Auteurs

Maria Camila Rodriguez Gallo (MC)

University of Alberta, Department of Biological Sciences, Edmonton, AB, Canada.

R Glen Uhrig (RG)

University of Alberta, Department of Biological Sciences, Edmonton, AB, Canada.
University of Alberta, Department of Biochemistry, Edmonton, AB, Canada.

Classifications MeSH