The duplication of genomes and genetic networks and its potential for evolutionary adaptation and survival during environmental turmoil.

cataclysmic events environmental turmoil gene regulatory networks polyploidy whole-genome duplication

Journal

Proceedings of the National Academy of Sciences of the United States of America
ISSN: 1091-6490
Titre abrégé: Proc Natl Acad Sci U S A
Pays: United States
ID NLM: 7505876

Informations de publication

Date de publication:
10 10 2023
Historique:
pmc-release: 03 04 2024
medline: 5 10 2023
pubmed: 3 10 2023
entrez: 3 10 2023
Statut: ppublish

Résumé

The importance of whole-genome duplication (WGD) for evolution is controversial. Whereas some view WGD mainly as detrimental and an evolutionary dead end, there is growing evidence that polyploidization can help overcome environmental change, stressful conditions, or periods of extinction. However, despite much research, the mechanistic underpinnings of why and how polyploids might be able to outcompete or outlive nonpolyploids at times of environmental upheaval remain elusive, especially for autopolyploids, in which heterosis effects are limited. On the longer term, WGD might increase both mutational and environmental robustness due to redundancy and increased genetic variation, but on the short-or even immediate-term, selective advantages of WGDs are harder to explain. Here, by duplicating artificially generated Gene Regulatory Networks (GRNs), we show that duplicated GRNs-and thus duplicated genomes-show higher signal output variation than nonduplicated GRNs. This increased variation leads to niche expansion and can provide polyploid populations with substantial advantages to survive environmental turmoil. In contrast, under stable environments, GRNs might be maladaptive to changes, a phenomenon that is exacerbated in duplicated GRNs. We believe that these results provide insights into how genome duplication and (auto)polyploidy might help organisms to adapt quickly to novel conditions and to survive ecological uproar or even cataclysmic events.

Identifiants

pubmed: 37788315
doi: 10.1073/pnas.2307289120
pmc: PMC10576144
doi:

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

e2307289120

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Auteurs

Mehrshad Ebadi (M)

Department of Plant Biotechnology and Bioinformatics, Ghent University, Gent 9052, Belgium.
Center for Plant Systems Biology, VIB, Gent 9052, Belgium.

Quinten Bafort (Q)

Department of Plant Biotechnology and Bioinformatics, Ghent University, Gent 9052, Belgium.
Center for Plant Systems Biology, VIB, Gent 9052, Belgium.

Eshchar Mizrachi (E)

Department of Biochemistry, Genetics and Microbiology, University of Pretoria, Pretoria 0028, South Africa.

Pieter Audenaert (P)

Department of Information Technology-IDLab, Ghent University-IMEC, Gent 9052, Belgium.

Pieter Simoens (P)

Department of Information Technology-IDLab, Ghent University-IMEC, Gent 9052, Belgium.

Marc Van Montagu (M)

Department of Plant Biotechnology and Bioinformatics, Ghent University, Gent 9052, Belgium.
Center for Plant Systems Biology, VIB, Gent 9052, Belgium.

Dries Bonte (D)

Department of Biology, Terrestrial Ecology Unit, Ghent University, Ghent 9000, Belgium.

Yves Van de Peer (Y)

Department of Plant Biotechnology and Bioinformatics, Ghent University, Gent 9052, Belgium.
Center for Plant Systems Biology, VIB, Gent 9052, Belgium.
Department of Biochemistry, Genetics and Microbiology, University of Pretoria, Pretoria 0028, South Africa.
College of Horticulture, Academy for Advanced Interdisciplinary Studies, Nanjing Agricultural University, Nanjing 210095, China.

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