An eXplainable Artificial Intelligence analysis of Raman spectra for thyroid cancer diagnosis.


Journal

Scientific reports
ISSN: 2045-2322
Titre abrégé: Sci Rep
Pays: England
ID NLM: 101563288

Informations de publication

Date de publication:
03 10 2023
Historique:
received: 30 06 2023
accepted: 29 09 2023
medline: 5 10 2023
pubmed: 4 10 2023
entrez: 3 10 2023
Statut: epublish

Résumé

Raman spectroscopy shows great potential as a diagnostic tool for thyroid cancer due to its ability to detect biochemical changes during cancer development. This technique is particularly valuable because it is non-invasive and label/dye-free. Compared to molecular tests, Raman spectroscopy analyses can more effectively discriminate malignant features, thus reducing unnecessary surgeries. However, one major hurdle to using Raman spectroscopy as a diagnostic tool is the identification of significant patterns and peaks. In this study, we propose a Machine Learning procedure to discriminate healthy/benign versus malignant nodules that produces interpretable results. We collect Raman spectra obtained from histological samples, select a set of peaks with a data-driven and label independent approach and train the algorithms with the relative prominence of the peaks in the selected set. The performance of the considered models, quantified by area under the Receiver Operating Characteristic curve, exceeds 0.9. To enhance the interpretability of the results, we employ eXplainable Artificial Intelligence and compute the contribution of each feature to the prediction of each sample.

Identifiants

pubmed: 37789191
doi: 10.1038/s41598-023-43856-7
pii: 10.1038/s41598-023-43856-7
pmc: PMC10547772
doi:

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

16590

Informations de copyright

© 2023. Springer Nature Limited.

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Auteurs

Loredana Bellantuono (L)

Dipartimento di Biomedicina Traslazionale e Neuroscienze (DiBraiN), Università degli Studi di Bari Aldo Moro, 70124, Bari, Italy.
Istituto Nazionale di Fisica Nucleare, Sezione di Bari, 70125, Bari, Italy.

Raffaele Tommasi (R)

Dipartimento di Biomedicina Traslazionale e Neuroscienze (DiBraiN), Università degli Studi di Bari Aldo Moro, 70124, Bari, Italy.

Ester Pantaleo (E)

Istituto Nazionale di Fisica Nucleare, Sezione di Bari, 70125, Bari, Italy.
Dipartimento Interateneo di Fisica, Università degli Studi di Bari Aldo Moro, 70125, Bari, Italy.

Martina Verri (M)

Unit of Endocrine Organs and Neuromuscolar Pathology, Fondazione Policlinico Universitario Campus Bio-Medico, 00128, Rome, Italy.
Dipartimento di Scienze, Università degli Studi Roma Tre, 00146, Roma, Italy.

Nicola Amoroso (N)

Istituto Nazionale di Fisica Nucleare, Sezione di Bari, 70125, Bari, Italy.
Dipartimento di Farmacia-Scienze del Farmaco, Università degli Studi di Bari Aldo Moro, 70125, Bari, Italy.

Pierfilippo Crucitti (P)

Unit of Thoracic Surgery, Fondazione Policlinico Universitario Campus Bio-Medico, 00128, Rome, Italy.

Michael Di Gioacchino (M)

Dipartimento di Scienze, Università degli Studi Roma Tre, 00146, Roma, Italy. michael.digioacchino@uniroma3.it.

Filippo Longo (F)

Unit of Thoracic Surgery, Fondazione Policlinico Universitario Campus Bio-Medico, 00128, Rome, Italy.

Alfonso Monaco (A)

Istituto Nazionale di Fisica Nucleare, Sezione di Bari, 70125, Bari, Italy.
Dipartimento Interateneo di Fisica, Università degli Studi di Bari Aldo Moro, 70125, Bari, Italy.

Anda Mihaela Naciu (AM)

Unit of Metabolic Bone and Thyroid Diseases, Fondazione Policlinico Universitario Campus Bio-Medico, 00128, Rome, Italy.

Andrea Palermo (A)

Unit of Metabolic Bone and Thyroid Diseases, Fondazione Policlinico Universitario Campus Bio-Medico, 00128, Rome, Italy.

Chiara Taffon (C)

Unit of Endocrine Organs and Neuromuscolar Pathology, Fondazione Policlinico Universitario Campus Bio-Medico, 00128, Rome, Italy.

Sabina Tangaro (S)

Istituto Nazionale di Fisica Nucleare, Sezione di Bari, 70125, Bari, Italy.
Dipartimento di Scienze del Suolo, della Pianta e degli Alimenti, Università degli Studi di Bari Aldo Moro, 70125, Bari, Italy.

Anna Crescenzi (A)

Unit of Endocrine Organs and Neuromuscolar Pathology, Fondazione Policlinico Universitario Campus Bio-Medico, 00128, Rome, Italy.

Armida Sodo (A)

Dipartimento di Scienze, Università degli Studi Roma Tre, 00146, Roma, Italy.

Roberto Bellotti (R)

Istituto Nazionale di Fisica Nucleare, Sezione di Bari, 70125, Bari, Italy.
Dipartimento Interateneo di Fisica, Università degli Studi di Bari Aldo Moro, 70125, Bari, Italy.

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