TotalSegmentator: Robust Segmentation of 104 Anatomic Structures in CT Images.

CT Neural Networks Segmentation

Journal

Radiology. Artificial intelligence
ISSN: 2638-6100
Titre abrégé: Radiol Artif Intell
Pays: United States
ID NLM: 101746556

Informations de publication

Date de publication:
Sep 2023
Historique:
received: 25 01 2023
revised: 16 05 2023
accepted: 14 06 2023
medline: 5 10 2023
pubmed: 5 10 2023
entrez: 5 10 2023
Statut: epublish

Résumé

To present a deep learning segmentation model that can automatically and robustly segment all major anatomic structures on body CT images. In this retrospective study, 1204 CT examinations (from 2012, 2016, and 2020) were used to segment 104 anatomic structures (27 organs, 59 bones, 10 muscles, and eight vessels) relevant for use cases such as organ volumetry, disease characterization, and surgical or radiation therapy planning. The CT images were randomly sampled from routine clinical studies and thus represent a real-world dataset (different ages, abnormalities, scanners, body parts, sequences, and sites). The authors trained an nnU-Net segmentation algorithm on this dataset and calculated Dice similarity coefficients to evaluate the model's performance. The trained algorithm was applied to a second dataset of 4004 whole-body CT examinations to investigate age-dependent volume and attenuation changes. The proposed model showed a high Dice score (0.943) on the test set, which included a wide range of clinical data with major abnormalities. The model significantly outperformed another publicly available segmentation model on a separate dataset (Dice score, 0.932 vs 0.871; The developed model enables robust and accurate segmentation of 104 anatomic structures. The annotated dataset (

Identifiants

pubmed: 37795137
doi: 10.1148/ryai.230024
pmc: PMC10546353
doi:

Types de publication

Journal Article

Langues

eng

Pagination

e230024

Informations de copyright

© 2023 by the Radiological Society of North America, Inc.

Déclaration de conflit d'intérêts

Disclosures of conflicts of interest: J.W. No relevant relationships. H.C.B. No relevant relationships. M.T.M. No relevant relationships. M.P. No relevant relationships. D.H. No relevant relationships. A.W.S. No relevant relationships. T.H. No relevant relationships. D.T.B. No relevant relationships. J.C. No relevant relationships. S.Y. No relevant relationships. M.B. No relevant relationships. M.S. No relevant relationships.

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Auteurs

Jakob Wasserthal (J)

From the Clinic of Radiology and Nuclear Medicine, University Hospital Basel, Basel, Switzerland, Petersgraben 4, 4031 Basel, Switzerland.

Hanns-Christian Breit (HC)

From the Clinic of Radiology and Nuclear Medicine, University Hospital Basel, Basel, Switzerland, Petersgraben 4, 4031 Basel, Switzerland.

Manfred T Meyer (MT)

From the Clinic of Radiology and Nuclear Medicine, University Hospital Basel, Basel, Switzerland, Petersgraben 4, 4031 Basel, Switzerland.

Maurice Pradella (M)

From the Clinic of Radiology and Nuclear Medicine, University Hospital Basel, Basel, Switzerland, Petersgraben 4, 4031 Basel, Switzerland.

Daniel Hinck (D)

From the Clinic of Radiology and Nuclear Medicine, University Hospital Basel, Basel, Switzerland, Petersgraben 4, 4031 Basel, Switzerland.

Alexander W Sauter (AW)

From the Clinic of Radiology and Nuclear Medicine, University Hospital Basel, Basel, Switzerland, Petersgraben 4, 4031 Basel, Switzerland.

Tobias Heye (T)

From the Clinic of Radiology and Nuclear Medicine, University Hospital Basel, Basel, Switzerland, Petersgraben 4, 4031 Basel, Switzerland.

Daniel T Boll (DT)

From the Clinic of Radiology and Nuclear Medicine, University Hospital Basel, Basel, Switzerland, Petersgraben 4, 4031 Basel, Switzerland.

Joshy Cyriac (J)

From the Clinic of Radiology and Nuclear Medicine, University Hospital Basel, Basel, Switzerland, Petersgraben 4, 4031 Basel, Switzerland.

Shan Yang (S)

From the Clinic of Radiology and Nuclear Medicine, University Hospital Basel, Basel, Switzerland, Petersgraben 4, 4031 Basel, Switzerland.

Michael Bach (M)

From the Clinic of Radiology and Nuclear Medicine, University Hospital Basel, Basel, Switzerland, Petersgraben 4, 4031 Basel, Switzerland.

Martin Segeroth (M)

From the Clinic of Radiology and Nuclear Medicine, University Hospital Basel, Basel, Switzerland, Petersgraben 4, 4031 Basel, Switzerland.

Classifications MeSH