Emergence of a second SARS-CoV-2 variant with a tremendous genetic leap from its ancestors.


Journal

Journal of medical virology
ISSN: 1096-9071
Titre abrégé: J Med Virol
Pays: United States
ID NLM: 7705876

Informations de publication

Date de publication:
10 2023
Historique:
revised: 12 09 2023
received: 04 09 2023
accepted: 15 09 2023
medline: 10 10 2023
pubmed: 9 10 2023
entrez: 9 10 2023
Statut: ppublish

Résumé

The on-going emergence of the Omicron BA.2.86 variant is one of the major events in SARS-CoV-2 genetic evolution that remain enigmatic regarding the overall virus mutation rate, together with the emergence of the initial Omicron variant, BA.1. Indeed, the genomes of the Omicron BA.2.86 lineage, an offspring of the second major Omicron subvariant, BA.2, harbor 39 additional mutations in the spike compared to this ancestor. Here we comment on the phylogeny of BA.2.86, on the positions, and frequencies in other SARS-CoV-2, of mutations in its spike, and on the structural model of this protein that concentrates most of BA.2.86 additional mutations.

Identifiants

pubmed: 37811585
doi: 10.1002/jmv.29124
doi:

Substances chimiques

Spike Glycoprotein, Coronavirus 0
spike protein, SARS-CoV-2 0

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

e29124

Informations de copyright

© 2023 Wiley Periodicals LLC.

Références

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Auteurs

Philippe Colson (P)

Diagnosis Laboratory, IHU Méditerranée Infection, Marseille, France.
Microbes Evolution Phylogeny and Infections (MEPHI), Aix-Marseille Univ., Institut de Recherche pour le Développement (IRD), Marseille, France.
Diagnosis Laboratory, Assistance Publique-Hôpitaux de Marseille (AP-HM), Marseille, France.

Bernard La Scola (B)

Diagnosis Laboratory, IHU Méditerranée Infection, Marseille, France.
Microbes Evolution Phylogeny and Infections (MEPHI), Aix-Marseille Univ., Institut de Recherche pour le Développement (IRD), Marseille, France.
Diagnosis Laboratory, Assistance Publique-Hôpitaux de Marseille (AP-HM), Marseille, France.

Mamadou Beye (M)

Diagnosis Laboratory, IHU Méditerranée Infection, Marseille, France.

Jérémy Delerce (J)

Diagnosis Laboratory, IHU Méditerranée Infection, Marseille, France.

Didier Raoult (D)

Diagnosis Laboratory, IHU Méditerranée Infection, Marseille, France.
Microbes Evolution Phylogeny and Infections (MEPHI), Aix-Marseille Univ., Institut de Recherche pour le Développement (IRD), Marseille, France.

Jacques Fantini (J)

INSERM UMR_S 1072, Aix-Marseille Université, Marseille, France.

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