Theoretical study of ArcB and its dimerization, interaction with anaerobic metabolites, and activation of ArcA.


Journal

PeerJ
ISSN: 2167-8359
Titre abrégé: PeerJ
Pays: United States
ID NLM: 101603425

Informations de publication

Date de publication:
2023
Historique:
received: 17 05 2023
accepted: 27 09 2023
medline: 23 10 2023
pubmed: 18 10 2023
entrez: 18 10 2023
Statut: epublish

Résumé

The complex metabolism of

Identifiants

pubmed: 37849831
doi: 10.7717/peerj.16309
pii: 16309
pmc: PMC10578306
doi:

Substances chimiques

Bacterial Outer Membrane Proteins 0
Bacterial Proteins 0
Escherichia coli Proteins 0
Protein Kinases EC 2.7.-
Repressor Proteins 0
arcB protein, E coli EC 2.7.3.-
arcA protein, E coli 0

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

e16309

Informations de copyright

© 2023 Padilla-Vaca et al.

Déclaration de conflit d'intérêts

Bernardo Franco and Rodolfo García-Contreras are Academic Editors for PeerJ. The other authors declare that they have no competing interests.

Références

J Bacteriol. 2001 Dec;183(24):7206-12
pubmed: 11717280
J Cheminform. 2021 Jun 9;13(1):43
pubmed: 34108002
Nat Methods. 2022 Jun;19(6):679-682
pubmed: 35637307
Proc Natl Acad Sci U S A. 1988 Mar;85(6):1888-92
pubmed: 2964639
J Bacteriol. 2000 May;182(10):2960-6
pubmed: 10781568
Curr Opin Pharmacol. 2002 Oct;2(5):507-12
pubmed: 12324251
Bioinformatics. 2013 Nov 1;29(21):2722-8
pubmed: 23986568
Biochemistry. 2001 Jan 16;40(2):375-86
pubmed: 11148031
J Biol Chem. 2018 Aug 24;293(34):13214-13223
pubmed: 29945971
PLoS Comput Biol. 2008 May 09;4(4):e1000071
pubmed: 18437229
Acta Pharmacol Sin. 2020 Jan;41(1):138-144
pubmed: 31263275
J Microbiol. 2009 Oct;47(5):657-62
pubmed: 19851741
J Bacteriol. 1989 Feb;171(2):868-73
pubmed: 2644240
J Bacteriol. 2005 May;187(9):3267-72
pubmed: 15838055
Cell. 2017 Nov 30;171(6):1354-1367.e20
pubmed: 29103614
J Bacteriol. 2004 Apr;186(7):2085-90
pubmed: 15028693
Bioinformatics. 2014 Jun 15;30(12):1674-80
pubmed: 24563257
J Biol Chem. 1999 Dec 10;274(50):35950-4
pubmed: 10585483
J Bacteriol. 2010 Mar;192(6):1735-9
pubmed: 20097862
PLoS One. 2019 Oct 11;14(10):e0223794
pubmed: 31603938
J Comput Chem. 2004 Oct;25(13):1605-12
pubmed: 15264254
Essays Biochem. 2021 Jul 26;65(2):225-246
pubmed: 33956149
Protein Eng Des Sel. 2004 Nov;17(11):795-808
pubmed: 15576382
Science. 2001 Jun 22;292(5525):2314-6
pubmed: 11423658
PLoS One. 2012;7(5):e38187
pubmed: 22666479
Cell. 1991 Dec 20;67(6):1157-67
pubmed: 1760843
J Biol Chem. 1998 Dec 4;273(49):32864-9
pubmed: 9830034
Eur J Biochem. 1995 Aug 15;232(1):304-8
pubmed: 7556165
Infect Immun. 2023 Apr 18;91(4):e0004623
pubmed: 36975788
J Biol Chem. 2003 Apr 11;278(15):13192-5
pubmed: 12562763
Elife. 2022 Jun 10;11:
pubmed: 35686729
J Mol Biol. 2005 May 27;349(1):11-26
pubmed: 15876365
Biosens Bioelectron. 2020 Nov 15;168:112523
pubmed: 32871497
J Biochem. 2000 May;127(5):855-60
pubmed: 10788795
Nature. 2021 Aug;596(7873):583-589
pubmed: 34265844
Proc Natl Acad Sci U S A. 2004 Sep 7;101(36):13318-23
pubmed: 15326287
Front Bioinform. 2023 Feb 28;3:1120370
pubmed: 36926275
FEMS Microbiol Lett. 2008 Jul;284(1):109-19
pubmed: 18462392
J Mol Med Clin Appl. 2017;2(1):
pubmed: 29333532
J Bacteriol. 2000 Jul;182(13):3858-62
pubmed: 10851007
F1000Res. 2019 Dec 27;8:
pubmed: 31942238
Biotechnol Bioeng. 2021 Nov;118(11):4278-4289
pubmed: 34289076
J Biol Chem. 2005 Jan 14;280(2):1448-56
pubmed: 15522865
Proc Natl Acad Sci U S A. 2010 Jun 15;107(24):10902-7
pubmed: 20498088
Front Artif Intell. 2022 Jun 09;5:875587
pubmed: 35757294
Microbiol Mol Biol Rev. 2021 Aug 18;85(3):e0017620
pubmed: 34191587
Comput Struct Biotechnol J. 2013 Jan 18;3:e201210019
pubmed: 24688679
PLoS One. 2023 Mar 16;18(3):e0282689
pubmed: 36928239
FEMS Microbiol Lett. 2000 May 15;186(2):157-61
pubmed: 10802164
Mol Microbiol. 1990 May;4(5):715-27
pubmed: 2201868
FEBS Lett. 1997 May 26;408(3):337-40
pubmed: 9188789
Front Plant Sci. 2015 Jul 09;6:513
pubmed: 26217364
Germs. 2022 Jun 30;12(2):262-275
pubmed: 36504617
Nucleic Acids Res. 2018 Jul 2;46(W1):W380-W386
pubmed: 29788129
Biochem Soc Trans. 2022 Dec 16;50(6):1859-1873
pubmed: 36398786
J Bacteriol. 1997 Sep;179(17):5429-35
pubmed: 9286997
Nucleic Acids Res. 2000 Jan 1;28(1):27-30
pubmed: 10592173
PLoS One. 2011;6(9):e25501
pubmed: 21980479
Acta Crystallogr D Biol Crystallogr. 1998 Jan 1;54(Pt 1):140-2
pubmed: 9761838
Methods Enzymol. 2010;471:205-28
pubmed: 20946850
J Biol Chem. 2001 Nov 2;276(44):40873-9
pubmed: 11527965
ACS Synth Biol. 2021 Jul 16;10(7):1605-1614
pubmed: 34170110
Annu Rev Biochem. 2000;69:183-215
pubmed: 10966457
J Biol Chem. 2004 Mar 26;279(13):12588-97
pubmed: 14711822
Biosci Biotechnol Biochem. 2007 Jan;71(1):77-83
pubmed: 17213678
Cell. 1997 Mar 7;88(5):717-23
pubmed: 9054511
Nat Methods. 2022 Sep;19(9):1109-1115
pubmed: 36038728
J Bacteriol. 2013 Jul;195(13):3054-61
pubmed: 23645604
Acta Crystallogr D Biol Crystallogr. 1999 Nov;55(Pt 11):1842-9
pubmed: 10531481
Curr Opin Chem Biol. 2009 Apr;13(2):144-51
pubmed: 19303806

Auteurs

Felipe Padilla-Vaca (F)

Biology, Universidad de Guanajuato, Guanajuato, Guanajuato, México.

Javier de la Mora (J)

Genética Molecular, Instituto de Fisiología Celular, Mexico City, Mexico City, México.

Rodolfo García-Contreras (R)

Facultad de Médicina, Universidad Nacional Autónoma de México, Mexico City, Mexico City, Mexico.

Jorge Humberto Ramírez-Prado (JH)

Unidad de Biotecnología, Centro de Investigación Científica de Yucatán, A. C., Mérida, Yucatán, México.

Marcos Vicente-Gómez (M)

Biology, Universidad de Guanajuato, Guanajuato, Guanajuato, México.

Francisco Vargas-Gasca (F)

Biology, Universidad de Guanajuato, Guanajuato, Guanajuato, México.

Fernando Anaya-Velázquez (F)

Biology, Universidad de Guanajuato, Guanajuato, Guanajuato, México.

Itzel Páramo-Pérez (I)

Biology, Universidad de Guanajuato, Guanajuato, Guanajuato, México.

Ángeles Rangel-Serrano (Á)

Biology, Universidad de Guanajuato, Guanajuato, Guanajuato, México.

Patricia Cuéllar-Mata (P)

Biology, Universidad de Guanajuato, Guanajuato, Guanajuato, México.

Naurú Idalia Vargas-Maya (NI)

Biology, Universidad de Guanajuato, Guanajuato, Guanajuato, México.

Bernardo Franco (B)

Biology, Universidad de Guanajuato, Guanajuato, Guanajuato, México.

Articles similaires

Photosynthesis Ribulose-Bisphosphate Carboxylase Carbon Dioxide Molecular Dynamics Simulation Cyanobacteria
Animals TOR Serine-Threonine Kinases Colorectal Neoplasms Colitis Mice
Vancomycin Polyesters Anti-Bacterial Agents Models, Theoretical Drug Liberation
Biofilms Candida albicans Quorum Sensing Candida glabrata Menthol

Classifications MeSH