Asterics: a simple tool for the ExploRation and Integration of omiCS data.
Journal
BMC bioinformatics
ISSN: 1471-2105
Titre abrégé: BMC Bioinformatics
Pays: England
ID NLM: 100965194
Informations de publication
Date de publication:
18 Oct 2023
18 Oct 2023
Historique:
received:
30
06
2023
accepted:
28
09
2023
medline:
23
10
2023
pubmed:
19
10
2023
entrez:
18
10
2023
Statut:
epublish
Résumé
The rapid development of omics acquisition techniques has induced the production of a large volume of heterogeneous and multi-level omics datasets, which require specific and sometimes complex analyses to obtain relevant biological information. Here, we present ASTERICS (version 2.5), a publicly available web interface for the analyses of omics datasets. ASTERICS is designed to make both standard and complex exploratory and integration analysis workflows easily available to biologists and to provide high quality interactive plots. Special care has been taken to provide a comprehensive documentation of the implemented analyses and to guide users toward sound analysis choices regarding some specific omics data. Data and analyses are organized in a comprehensive graphical workflow within ASTERICS workspace to facilitate the understanding of successive data editions and analyses leading to a given result. ASTERICS provides an easy to use platform for omics data exploration and integration. The modular organization of its open source code makes it easy to incorporate new workflows and analyses by external contributors. ASTERICS is available at https://asterics.miat.inrae.fr and can also be deployed using provided docker images.
Sections du résumé
BACKGROUND
BACKGROUND
The rapid development of omics acquisition techniques has induced the production of a large volume of heterogeneous and multi-level omics datasets, which require specific and sometimes complex analyses to obtain relevant biological information. Here, we present ASTERICS (version 2.5), a publicly available web interface for the analyses of omics datasets.
RESULTS
RESULTS
ASTERICS is designed to make both standard and complex exploratory and integration analysis workflows easily available to biologists and to provide high quality interactive plots. Special care has been taken to provide a comprehensive documentation of the implemented analyses and to guide users toward sound analysis choices regarding some specific omics data. Data and analyses are organized in a comprehensive graphical workflow within ASTERICS workspace to facilitate the understanding of successive data editions and analyses leading to a given result.
CONCLUSION
CONCLUSIONS
ASTERICS provides an easy to use platform for omics data exploration and integration. The modular organization of its open source code makes it easy to incorporate new workflows and analyses by external contributors. ASTERICS is available at https://asterics.miat.inrae.fr and can also be deployed using provided docker images.
Identifiants
pubmed: 37853347
doi: 10.1186/s12859-023-05504-9
pii: 10.1186/s12859-023-05504-9
pmc: PMC10583411
doi:
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
391Subventions
Organisme : Région Occitanie https://www.laregion.fr/
ID : 20008788
Organisme : Région Occitanie https://www.laregion.fr/
ID : 20008788
Organisme : Région Occitanie https://www.laregion.fr/
ID : 20008788
Organisme : Région Occitanie https://www.laregion.fr/
ID : 20008788
Organisme : Région Occitanie https://www.laregion.fr/
ID : 20008788
Organisme : Région Occitanie https://www.laregion.fr/
ID : 20008788
Organisme : Région Occitanie https://www.laregion.fr/
ID : 20008788
Organisme : Région Occitanie https://www.laregion.fr/
ID : 20008788
Organisme : Région Occitanie https://www.laregion.fr/
ID : 20008788
Organisme : Région Occitanie https://www.laregion.fr/
ID : 20008788
Organisme : Région Occitanie https://www.laregion.fr/
ID : 20008788
Informations de copyright
© 2023. BioMed Central Ltd., part of Springer Nature.
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