Multivariate Independent Component Analysis Identifies Patients in Newborn Screening Equally to Adjusted Reference Ranges.

compositional data analysis inborn errors of metabolism independent component analysis mass spectrometry multivariate statistical analysis newborn screening

Journal

International journal of neonatal screening
ISSN: 2409-515X
Titre abrégé: Int J Neonatal Screen
Pays: Switzerland
ID NLM: 101665400

Informations de publication

Date de publication:
20 Oct 2023
Historique:
received: 22 08 2023
revised: 22 09 2023
accepted: 17 10 2023
medline: 24 10 2023
pubmed: 24 10 2023
entrez: 24 10 2023
Statut: epublish

Résumé

Newborn screening (NBS) of inborn errors of metabolism (IEMs) is based on the reference ranges established on a healthy newborn population using quantile statistics of molar concentrations of biomarkers and their ratios. The aim of this paper is to investigate whether multivariate independent component analysis (ICA) is a useful tool for the analysis of NBS data, and also to address the structure of the calculated ICA scores. NBS data were obtained from a routine NBS program performed between 2013 and 2022. ICA was tested on 10,213/150 free-diseased controls and 77/20 patients (9/3 different IEMs) in the discovery/validation phases, respectively. The same model computed during the discovery phase was used in the validation phase to confirm its validity. The plots of ICA scores were constructed, and the results were evaluated based on 5sd levels. Patient samples from 7/3 different diseases were clearly identified as 5sd-outlying from control groups in both phases of the study. Two IEMs containing only one patient each were separated at the 3sd level in the discovery phase. Moreover, in one latent variable, the effect of neonatal birth weight was evident. The results strongly suggest that ICA, together with an interpretation derived from values of the "average member of the score structure", is generally applicable and has the potential to be included in the decision process in the NBS program.

Identifiants

pubmed: 37873851
pii: ijns9040060
doi: 10.3390/ijns9040060
pmc: PMC10594528
pii:
doi:

Types de publication

Journal Article

Langues

eng

Références

J Ment Defic Res. 1958 Jun;2(1):8-16
pubmed: 13576048
Clin Chem. 1993 Jan;39(1):66-71
pubmed: 8419060
J Inherit Metab Dis. 2019 Sep;42(5):890-897
pubmed: 31012112
JIMD Rep. 2022 Mar 23;63(3):250-261
pubmed: 35433168
JIMD Rep. 2020 May 13;54(1):68-78
pubmed: 32685353
Am J Public Health Nations Health. 1964 Dec;54:2075-81
pubmed: 14240515
J Med Screen. 2000;7(3):131-5
pubmed: 11126161
Genet Med. 2011 Mar;13(3):230-54
pubmed: 21325949
Mol Genet Metab. 2017 Nov;122(3):67-75
pubmed: 28801073
Cent Eur J Public Health. 2019 Jun;27(2):153-159
pubmed: 31241292
Clin Chem. 2003 Nov;49(11):1797-817
pubmed: 14578311
JIMD Rep. 2020 Aug 16;56(1):70-81
pubmed: 33204598
JIMD Rep. 2012;6:95-9
pubmed: 23430945

Auteurs

Štěpán Kouřil (Š)

Department of Clinical Biochemistry, University Hospital Olomouc, 779 00 Olomouc, Czech Republic.

Julie de Sousa (J)

Laboratory of Metabolomics, Institute of Molecular and Translational Medicine, Palacký University Olomouc, 779 00 Olomouc, Czech Republic.
Department of Mathematical Analysis and Applications of Mathematics, Faculty of Science, Palacký University Olomouc, 779 00 Olomouc, Czech Republic.

Kamila Fačevicová (K)

Department of Mathematical Analysis and Applications of Mathematics, Faculty of Science, Palacký University Olomouc, 779 00 Olomouc, Czech Republic.

Alžběta Gardlo (A)

Department of Clinical Biochemistry, University Hospital Olomouc, 779 00 Olomouc, Czech Republic.
Laboratory of Metabolomics, Institute of Molecular and Translational Medicine, Palacký University Olomouc, 779 00 Olomouc, Czech Republic.

Christoph Muehlmann (C)

Institute of Statistics & Mathematical Methods in Economics, Vienna University of Technology, 1040 Vienna, Austria.

Klaus Nordhausen (K)

Department of Mathematics and Statistics, University of Jyväskylä, 40014 Jyväskylä, Finland.

David Friedecký (D)

Department of Clinical Biochemistry, University Hospital Olomouc, 779 00 Olomouc, Czech Republic.

Tomáš Adam (T)

Department of Clinical Biochemistry, University Hospital Olomouc, 779 00 Olomouc, Czech Republic.
Laboratory of Metabolomics, Institute of Molecular and Translational Medicine, Palacký University Olomouc, 779 00 Olomouc, Czech Republic.
Faculty of Health Care, The Slovak Medical University in Bratislava, 974 05 Banská Bystrica, Slovakia.

Classifications MeSH