"Boundary residues" between the folded RNA recognition motif and disordered RGG domains are critical for FUS-RNA binding.

RNA recognition motif RNA–FUS binding fused in sarcoma low-complexity domain molecular simulations

Journal

The Journal of biological chemistry
ISSN: 1083-351X
Titre abrégé: J Biol Chem
Pays: United States
ID NLM: 2985121R

Informations de publication

Date de publication:
27 Oct 2023
Historique:
received: 21 02 2023
revised: 19 09 2023
accepted: 19 10 2023
pubmed: 28 10 2023
medline: 28 10 2023
entrez: 27 10 2023
Statut: aheadofprint

Résumé

Fused in sarcoma (FUS) is an abundant RNA-binding protein, which drives phase separation of cellular condensates and plays multiple roles in RNA regulation. The RNA-binding ability of FUS protein is crucial to its cellular function. Here, our molecular simulation study on the FUS-RNA complex provides atomic resolution insights into the observations from biochemical studies and also illuminates our understanding of molecular driving forces that mediate the structure, stability, and interaction of the RNA recognition motif (RRM) and RGG domains of FUS with a stem-loop junction RNA. We observe clear cooperativity and division of labor among the ordered (RRM) and disordered domains (RGG1 and RGG2) of FUS that leads to an organized and tighter RNA binding. Irrespective of the length of RGG2, the RGG2-RNA interaction is confined to the stem-loop junction and the proximal stem regions. On the other hand, the RGG1 interactions are primarily with the longer RNA stem. We find that the C terminus of RRM, which make up the "boundary residues" that connect the folded RRM with the long disordered RGG2 stretch of the protein, plays a critical role in FUS-RNA binding. Our study provides high-resolution molecular insights into the FUS-RNA interactions and forms the basis for understanding the molecular origins of full-length FUS interaction with RNA.

Identifiants

pubmed: 37890778
pii: S0021-9258(23)02420-1
doi: 10.1016/j.jbc.2023.105392
pmc: PMC10687056
pii:
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

105392

Informations de copyright

Copyright © 2023 The Authors. Published by Elsevier Inc. All rights reserved.

Déclaration de conflit d'intérêts

Conflict of interest The authors declare that they have no conflicts of interest with the contents of this article.

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Auteurs

Sangeetha Balasubramanian (S)

Molecular Biophysics Unit, Indian Institute of Science Bangalore, Bangalore, Karnataka, India.

Shovamayee Maharana (S)

Department of Molecular and Cell Biology, Indian Institute of Science Bangalore, Bangalore, Karnataka, India.

Anand Srivastava (A)

Molecular Biophysics Unit, Indian Institute of Science Bangalore, Bangalore, Karnataka, India. Electronic address: anand@iisc.ac.in.

Classifications MeSH