Novel Insights on the Bacterial and Archaeal Diversity of the Panarea Shallow-Water Hydrothermal Vent Field.

benthic marine ecosystems hydrothermal vent microbial assemblage diversity next-generation sequencing turnover diversity

Journal

Microorganisms
ISSN: 2076-2607
Titre abrégé: Microorganisms
Pays: Switzerland
ID NLM: 101625893

Informations de publication

Date de publication:
30 Sep 2023
Historique:
received: 28 07 2023
revised: 18 09 2023
accepted: 28 09 2023
medline: 28 10 2023
pubmed: 28 10 2023
entrez: 28 10 2023
Statut: epublish

Résumé

Current knowledge of the microbial diversity of shallow-water hydrothermal vents is still limited. Recent evidence suggests that these peculiar and heterogeneous systems might host highly diversified microbial assemblages with novel or poorly characterized lineages. In the present work, we used 16S rRNA gene metabarcoding to provide novel insights into the diversity of the bacterial and archaeal assemblages in seawater and sediments of three shallow-water hydrothermal systems of Panarea Island (Tyrrhenian Sea). The three areas were characterized by hot, cold, or intermediate temperatures and related venting activities. Microbial biodiversity in seawater largely differed from the benthic one, both in α-diversity (i.e., richness of amplicon sequence variants-ASVs) and in prokaryotic assemblage composition. Furthermore, at the class level, the pelagic prokaryotic assemblages were very similar among sites, whereas the benthic microbial assemblages differed markedly, reflecting the distinct features of the hydrothermal activities at the three sites we investigated. Our results show that ongoing high-temperature emissions can influence prokaryotic α-diversity at the seafloor, increasing turnover (β-)diversity, and that the intermediate-temperature-venting spot that experienced a violent gas explosion 20 years ago now displays the highest benthic prokaryotic diversity. Overall, our results suggest that hydrothermal vent dynamics around Panarea Island can contribute to an increase in the local heterogeneity of physical-chemical conditions, especially at the seafloor, in turn boosting the overall microbial (γ-)diversity of this peculiar hydrothermal system.

Identifiants

pubmed: 37894122
pii: microorganisms11102464
doi: 10.3390/microorganisms11102464
pmc: PMC10608945
pii:
doi:

Types de publication

Journal Article

Langues

eng

Subventions

Organisme : Italian Ministry for University and Research
ID : 2007-2013-PON03PE_00203_1 CUP: B62F15000210005

Références

Front Microbiol. 2017 Jun 23;8:1134
pubmed: 28690595
Microbiome. 2022 Oct 14;10(1):170
pubmed: 36242065
Front Microbiol. 2022 Nov 17;13:960335
pubmed: 36466646
Sci Rep. 2018 Aug 14;8(1):12085
pubmed: 30108256
Environ Microbiol. 2017 Nov;19(11):4432-4446
pubmed: 28805344
Microbiome. 2022 Dec 27;10(1):241
pubmed: 36572924
ISME J. 2021 Mar;15(3):762-773
pubmed: 33097854
Int J Syst Evol Microbiol. 2013 Aug;63(Pt 8):2992-3002
pubmed: 23378114
mSystems. 2021 Oct 26;6(5):e0094421
pubmed: 34609172
FEMS Microbiol Ecol. 2022 Dec 14;99(1):
pubmed: 36427064
Front Microbiol. 2018 Nov 13;9:2718
pubmed: 30555427
Mar Genomics. 2022 Jun;63:100936
pubmed: 35568398
Environ Microbiol. 2016 May;18(5):1403-14
pubmed: 26271760
Nat Rev Microbiol. 2019 May;17(5):271-283
pubmed: 30867583
Ann Rev Mar Sci. 2017 Jan 3;9:231-255
pubmed: 27687974
Front Microbiol. 2018 Feb 22;9:279
pubmed: 29527196
Extremophiles. 2017 Jul;21(4):733-742
pubmed: 28493148
Front Microbiol. 2020 Aug 20;11:2023
pubmed: 32973733
Front Microbiol. 2023 Jan 06;13:1060168
pubmed: 36687571
BMC Genomics. 2020 Aug 20;21(1):569
pubmed: 32819293
Front Microbiol. 2013 Jul 08;4:184
pubmed: 23847607
Bioinformatics. 2014 Nov 1;30(21):3123-4
pubmed: 25061070
Mar Environ Res. 2020 Sep;160:105040
pubmed: 32907739
Nucleic Acids Res. 2013 Jan;41(Database issue):D590-6
pubmed: 23193283
Microorganisms. 2022 Feb 21;10(2):
pubmed: 35208933
ISME J. 2021 May;15(5):1271-1286
pubmed: 33328652
Appl Environ Microbiol. 2007 Dec;73(23):7642-56
pubmed: 17921273
Front Microbiol. 2017 Dec 04;8:2400
pubmed: 29255454
Environ Microbiol Rep. 2013 Oct;5(5):731-9
pubmed: 24115624
Adv Mar Biol. 2006;50:267-421
pubmed: 16782453
Extremophiles. 2015 May;19(3):547-59
pubmed: 25716144
Front Microbiol. 2017 Apr 24;8:682
pubmed: 28484436
J Basic Microbiol. 2015 Nov;55(11):1308-18
pubmed: 26132902
Phys Life Rev. 2021 Mar;36:137-161
pubmed: 31072789
ISME J. 2022 Jan;16(1):307-320
pubmed: 34331018
Microorganisms. 2021 Apr 06;9(4):
pubmed: 33917639
Front Microbiol. 2021 Apr 06;12:638300
pubmed: 33889140
FEMS Microbiol Ecol. 2002 Feb 1;39(2):91-100
pubmed: 19709188
Curr Microbiol. 2014 Oct;69(4):457-66
pubmed: 24849732
Nat Biotechnol. 2019 Aug;37(8):852-857
pubmed: 31341288
Front Microbiol. 2022 Feb 23;13:840205
pubmed: 35283854
Front Microbiol. 2019 Nov 14;10:2609
pubmed: 31798555

Auteurs

Erika Arcadi (E)

Department of Integrative Marine Ecology, Stazione Zoologica Anton Dohrn, Sicily Marine Centre, Contrada Porticatello, 29, 98167 Messina, Italy.

Emanuela Buschi (E)

Department of Marine Biotechnology, Stazione Zoologica Anton Dohrn, Fano Marine Centre, Viale Adriatico 1-N, 61032 Fano, Italy.

Eugenio Rastelli (E)

Department of Marine Biotechnology, Stazione Zoologica Anton Dohrn, Fano Marine Centre, Viale Adriatico 1-N, 61032 Fano, Italy.

Michael Tangherlini (M)

Department of Research Infrastructures for Marine Biological Resources, Stazione Zoologica Anton Dohrn, Fano Marine Centre, Viale Adriatico 1-N, 61032 Fano, Italy.

Pasquale De Luca (P)

Department of Research Infrastructures for Marine Biological Resources, Stazione Zoologica Anton Dohrn, Villa Comunale, 80121 Napoli, Italy.

Valentina Esposito (V)

Istituto Nazionale di Oceanografia e di Geofisica Sperimentale-OGS Borgo Grotta Gigante 42/C, 34010 Sgonico, Italy.

Rosario Calogero (R)

Department of Integrative Marine Ecology, Stazione Zoologica Anton Dohrn, Sicily Marine Centre, Contrada Porticatello, 29, 98167 Messina, Italy.

Franco Andaloro (F)

Department of Integrative Marine Ecology, Stazione Zoologica Anton Dohrn, Sicily Marine Centre, Contrada Porticatello, 29, 98167 Messina, Italy.

Teresa Romeo (T)

Department of Biology and Evolution of Marine Organisms, Stazione Zoologica Anton Dohrn, Sicily Marine Centre, Via dei Mille 46, 98057 Milazzo, Italy.
National Institute for Environmental Protection and Research, Via dei Mille 46, 98057 Milazzo, Italy.

Roberto Danovaro (R)

Department of Life and Environmental Sciences, Polytechnic University of Marche, Via Brecce Bianche, 60131 Ancona, Italy.
National Biodiversity Future Centre (NBFC), 90133 Palermo, Italy.

Classifications MeSH