Transcriptome analysis of Corvus splendens reveals a repertoire of antimicrobial peptides.
Journal
Scientific reports
ISSN: 2045-2322
Titre abrégé: Sci Rep
Pays: England
ID NLM: 101563288
Informations de publication
Date de publication:
31 10 2023
31 10 2023
Historique:
received:
23
06
2023
accepted:
25
10
2023
medline:
2
11
2023
pubmed:
1
11
2023
entrez:
1
11
2023
Statut:
epublish
Résumé
Multidrug resistance has become a global health problem associated with high morbidity and mortality. Antimicrobial peptides have been acknowledged as potential leads for prospective anti-infectives. Owing to their scavenging lifestyle, Corvus splendens is thought to have developed robust immunity to pathogens found in their diet, implying that they have evolved mechanisms to resist infection. In the current study, the transcriptome of C. splendens was sequenced, and de novo assembled to identify the presence of antimicrobial peptide genes. 72.09 million high-quality clean reads were obtained which were then de novo assembled into 3,43,503 transcripts and 74,958 unigenes. About 37,559 unigenes were successfully annotated using SwissProt, Pfam, GO, and KEGG databases. A search against APD3, CAMP
Identifiants
pubmed: 37907616
doi: 10.1038/s41598-023-45875-w
pii: 10.1038/s41598-023-45875-w
pmc: PMC10618271
doi:
Substances chimiques
Antimicrobial Peptides
0
Lipopolysaccharides
0
Anti-Infective Agents
0
Cathelicidins
0
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
18728Informations de copyright
© 2023. The Author(s).
Références
Sci Rep. 2016 Jun 02;6:27258
pubmed: 27251456
Peptides. 2019 Feb;112:56-66
pubmed: 30500360
Zool Res. 2019 Nov 18;40(6):488-505
pubmed: 31592585
Dev Comp Immunol. 2021 Feb;115:103903
pubmed: 33098855
Sci Rep. 2016 Jun 08;6:27394
pubmed: 27271216
Ann Agric Environ Med. 2007;14(1):1-4
pubmed: 17655171
Sci Rep. 2019 Jul 12;9(1):10138
pubmed: 31300668
Biotechniques. 1995 Dec;19(6):942-5
pubmed: 8747660
Bioinformatics. 2006 Sep 15;22(18):2232-6
pubmed: 16837527
Am J Transl Res. 2019 Jul 15;11(7):3919-3931
pubmed: 31396309
Protein Pept Lett. 2020;27(1):4-16
pubmed: 31438824
Pharmaceuticals (Basel). 2014 Feb 27;7(3):220-47
pubmed: 24583933
Int J Mol Sci. 2022 Feb 24;23(5):
pubmed: 35269641
J Phys Chem B. 2015 Jan 22;119(3):850-60
pubmed: 25062757
Blood. 2011 Apr 28;117(17):4425-33
pubmed: 21346250
Molecules. 2012 Oct 18;17(10):12276-86
pubmed: 23079498
Genome. 2014 Sep;57(9):499-506
pubmed: 25633965
Cell Metab. 2017 Mar 7;25(3):635-646
pubmed: 28273482
Proc Natl Acad Sci U S A. 2015 Jun 16;112(24):E3095-103
pubmed: 26038575
Front Pharmacol. 2021 Aug 16;12:731056
pubmed: 34483941
J Wildl Dis. 2007 Jul;43(3):548-50
pubmed: 17699099
Biochem Biophys Res Commun. 2004 Oct 22;323(3):721-7
pubmed: 15381059
Gut Microbes. 2018;9(3):218-235
pubmed: 29227180
J Cell Sci. 2014 Oct 1;127(Pt 19):4279-91
pubmed: 25074810
Sci Rep. 2015 Nov 26;5:17260
pubmed: 26608073
Biochim Biophys Acta. 2006 Sep;1758(9):1184-202
pubmed: 16756942
Nucleic Acids Res. 2023 Jan 6;51(D1):D587-D592
pubmed: 36300620
Bioinformatics. 2003 Mar 22;19(5):651-2
pubmed: 12651724
Vet Microbiol. 2011 Nov 21;153(1-2):27-36
pubmed: 21530107
Front Microbiol. 2018 Apr 19;9:751
pubmed: 29725321
Pediatr Nephrol. 2015 Aug;30(8):1225-32
pubmed: 25159719
Trends Genet. 2000 Jun;16(6):276-7
pubmed: 10827456
Crit Rev Biotechnol. 2020 Nov;40(7):978-992
pubmed: 32781848
Curr Issues Mol Biol. 2005 Jul;7(2):119-33
pubmed: 16053246
Biochim Biophys Acta. 1999 Dec 15;1462(1-2):71-87
pubmed: 10590303
Sci Rep. 2016 Jul 12;6:29641
pubmed: 27404915
Biochim Biophys Acta. 2015 May;1848(5):1111-8
pubmed: 25640709
FEBS J. 2007 Jan;274(2):418-28
pubmed: 17229147
Nat Biotechnol. 2022 Jul;40(7):1023-1025
pubmed: 34980915
Biomed Res Int. 2014;2014:867381
pubmed: 25243191
J Pept Res. 2002 Jul;60(1):1-9
pubmed: 12081622
Nucleic Acids Res. 2007 Jul;35(Web Server issue):W182-5
pubmed: 17526522
J Comput Chem. 2005 Dec;26(16):1781-802
pubmed: 16222654
Curr Pharm Des. 2002;8(9):779-93
pubmed: 11945171
J Biol Chem. 2006 Feb 3;281(5):2858-67
pubmed: 16326712
J Biol Chem. 2015 Jul 3;290(27):16633-52
pubmed: 26013823
Proc Jpn Acad Ser B Phys Biol Sci. 2012;88(4):152-66
pubmed: 22498979
Nucleic Acids Res. 2016 Jan 4;44(D1):D1087-93
pubmed: 26602694
J Leukoc Biol. 2004 Jan;75(1):39-48
pubmed: 12960280
Chem Soc Rev. 2010 Jun;39(6):2146-57
pubmed: 20502803
Toxins (Basel). 2018 Nov 08;10(11):
pubmed: 30413046
Eur J Pharm Sci. 2023 Feb 1;181:106363
pubmed: 36529161
Acta Biomater. 2014 Jan;10(1):244-57
pubmed: 24021230
J Ethnobiol Ethnomed. 2008 Jul 18;4:17
pubmed: 18634551
Peptides. 2021 Dec;146:170666
pubmed: 34600037
Biochim Biophys Acta. 2006 Sep;1758(9):1436-49
pubmed: 16678118
Reprod Biol Endocrinol. 2012 Sep 03;10:70
pubmed: 22943496
EMBO Mol Med. 2013 Oct;5(10):1465-83
pubmed: 24039130
Methods Mol Biol. 2021;2199:175-189
pubmed: 33125651
Antimicrob Agents Chemother. 2016 Apr 22;60(5):2798-806
pubmed: 26902768
Biochim Biophys Acta. 2016 Nov;1858(11):2699-2708
pubmed: 27423268
Mar Drugs. 2019 Jun 23;17(6):
pubmed: 31234579
Antimicrob Agents Chemother. 2006 May;50(5):1672-9
pubmed: 16641434
Front Chem. 2021 Jun 18;9:691532
pubmed: 34222199
PLoS One. 2016 Apr 21;11(4):e0153940
pubmed: 27100629
Curr Med Chem. 2017;24(38):4303-4314
pubmed: 28814242
Mil Med Res. 2021 Sep 9;8(1):48
pubmed: 34496967
Front Chem. 2018 Jun 05;6:204
pubmed: 29922648
FEBS J. 2011 May;278(9):1573-84
pubmed: 21375690
Poult Sci. 1998 Jul;77(7):972-7
pubmed: 9657606
Dev Comp Immunol. 2013 Nov;41(3):352-69
pubmed: 23644014
Islets. 2019;11(4):89-101
pubmed: 31242128
Nat Methods. 2012 Mar 04;9(4):357-9
pubmed: 22388286
Sci Rep. 2021 Jan 22;11(1):2132
pubmed: 33483611
Dev Comp Immunol. 2011 Mar;35(3):314-22
pubmed: 20955730
Future Microbiol. 2016;11(3):441-53
pubmed: 26939619
BMC Vet Res. 2016 Oct 13;12(1):231
pubmed: 27737668
Front Cell Infect Microbiol. 2019 Apr 30;9:128
pubmed: 31114762
Nat Rev Chem. 2021;5(10):726-749
pubmed: 34426795
Vet Microbiol. 1995 Dec;47(3-4):295-303
pubmed: 8748545
Nat Rev Microbiol. 2005 Mar;3(3):238-50
pubmed: 15703760
Int J Pept. 2013;2013:675391
pubmed: 23935642
Sheng Wu Yi Xue Gong Cheng Xue Za Zhi. 2022 Dec 25;39(6):1247-1253
pubmed: 36575095
Curr Protein Pept Sci. 2012 Dec;13(8):723-38
pubmed: 23305360
Nat Methods. 2015 Jan;12(1):59-60
pubmed: 25402007
Protein Sci. 2019 Nov;28(11):1947-1951
pubmed: 31441146
Cell Rep. 2017 Jan 17;18(3):762-776
pubmed: 28099853
Infect Immun. 2017 Nov 17;85(12):
pubmed: 28947647
Arch Pharm Res. 2012 Mar;35(3):409-13
pubmed: 22477186
J Wildl Dis. 1979 Jan;15(1):3-9
pubmed: 459044
Biophys J. 2007 Sep 1;93(5):1651-60
pubmed: 17496013
Infect Immun. 2004 Dec;72(12):6987-93
pubmed: 15557621
J Anim Sci Biotechnol. 2012 May 31;3(1):15
pubmed: 22958518
Lancet Infect Dis. 2001 Oct;1(3):156-64
pubmed: 11871492
Front Cell Infect Microbiol. 2016 Dec 27;6:194
pubmed: 28083516
Proc Natl Acad Sci U S A. 2007 Sep 18;104(38):15063-8
pubmed: 17827276
Bioinformatics. 2014 Jun 15;30(12):1771-3
pubmed: 24532726
Int J Pept Res Ther. 2010 Sep;16(3):199-213
pubmed: 20835389
J Chem Theory Comput. 2012 Sep 11;8(9):3257-3273
pubmed: 23341755
Vaccines (Basel). 2018 Sep 14;6(3):
pubmed: 30223448
Nucleic Acids Res. 2000 Jan 1;28(1):27-30
pubmed: 10592173
Nat Protoc. 2013 Aug;8(8):1494-512
pubmed: 23845962
Nature. 2002 Jan 24;415(6870):389-95
pubmed: 11807545
Nucleic Acids Res. 2016 Jan 4;44(D1):D1094-7
pubmed: 26467475
Biomolecules. 2018 Jan 19;8(1):
pubmed: 29351202
J Neuroimmunol. 2008 Aug 30;200(1-2):11-6
pubmed: 18603306
Nucleic Acids Res. 2011 Jul;39(Web Server issue):W13-7
pubmed: 21558174
PLoS One. 2014 Jul 14;9(7):e101742
pubmed: 25019413
Front Cell Infect Microbiol. 2021 Jun 14;11:668632
pubmed: 34195099
Antimicrob Agents Chemother. 2017 Mar 24;61(4):
pubmed: 28167546
Poult Sci. 2020 Jun;99(6):2983-2991
pubmed: 32475433
Dev Comp Immunol. 2013 Nov;41(3):334-40
pubmed: 23583524
BMC Evol Biol. 2012 May 29;12:72
pubmed: 22642364
Perspect Medicin Chem. 2014 Oct 12;6:73-80
pubmed: 25374459
PLoS One. 2010 Mar 03;5(3):e9505
pubmed: 20209079
Front Microbiol. 2020 Oct 16;11:582779
pubmed: 33178164
J Med Chem. 2013 May 9;56(9):3546-56
pubmed: 23594231
Sci Rep. 2015 Jul 21;5:11082
pubmed: 26194630
Nucleic Acids Res. 2018 Jul 2;46(W1):W315-W322
pubmed: 29893907
PLoS One. 2013 Jun 18;8(6):e66557
pubmed: 23825543
Proteins. 2012 Jul;80(7):1715-35
pubmed: 22411565