Comparative complete chloroplast genome of Geum japonicum: evolution and phylogenetic analysis.
Chloroplast genome
Comparative analysis
Geum japonicum
Phylogenetic relationship
Rosaceae
Structural characteristics
Journal
Journal of plant research
ISSN: 1618-0860
Titre abrégé: J Plant Res
Pays: Japan
ID NLM: 9887853
Informations de publication
Date de publication:
02 Nov 2023
02 Nov 2023
Historique:
received:
19
04
2023
accepted:
05
10
2023
pubmed:
2
11
2023
medline:
2
11
2023
entrez:
2
11
2023
Statut:
aheadofprint
Résumé
Geum japonicum (Rosaceae) has been widely used in China as a traditional herbal medicine due to its high economic and medicinal value. However, the appearance of Geum species is relatively similar, making identification difficult by conventional phenotypic methods, and the studies of genomics and species evolution are lacking. To better distinguish the medicinal varieties and fill this gap, we carried out relevant research on the chloroplast genome of G. japonicum. Results show a typical quadripartite structure of the chloroplast genome of G. japonicum with a length of 156,042 bp. There are totally 131 unique genes in the genome, including 87 protein-coding genes, 36 tRNA genes, and 8 rRNA genes, and there were also 87 SSRs identified and mostly mononucleotide Adenine-Thymine. We next compared the plastid genomes among four Geum species and obtained 14 hypervariable regions, including ndhF, psbE, trnG-UCC, ccsA, trnQ-UUG, rps16, psbK, trnL-UAA, ycf1, ndhD, atpA, petN, rps14, and trnK-UUU. Phylogenetic analysis revealed that G. japonicum is most closely related to Geum aleppicum, and possibly has some evolutionary relatedness with an ancient relic plant Taihangia rupestris. This research enriched the genome resources and provided fundamental insights for evolutionary studies and the phylogeny of Geum.
Identifiants
pubmed: 37917204
doi: 10.1007/s10265-023-01502-3
pii: 10.1007/s10265-023-01502-3
doi:
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Subventions
Organisme : CAMS Innovation Fund for Medical Sciences
ID : CIFMS, 2022-I2M-1-017
Organisme : Innovative Research Group Project of the National Natural Science Foundation of China
ID : U1812403-1
Organisme : State Key Laboratory of Microbial Resources
ID : SKLTCM2022015
Organisme : National Science and Technology Program during the Twelfth Five-year Plan Period
ID : 2018FY100701
Informations de copyright
© 2023. The Author(s) under exclusive licence to The Botanical Society of Japan.
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