A concise guide to choosing suitable gene expression systems for recombinant protein production.


Journal

STAR protocols
ISSN: 2666-1667
Titre abrégé: STAR Protoc
Pays: United States
ID NLM: 101769501

Informations de publication

Date de publication:
31 Oct 2023
Historique:
received: 18 05 2023
revised: 23 08 2023
accepted: 23 08 2023
medline: 2 11 2023
pubmed: 2 11 2023
entrez: 2 11 2023
Statut: aheadofprint

Résumé

This overview guides both novices and experienced researchers facing challenging targets to select the most appropriate gene expression system for producing a particular protein. By answering four key questions, readers can determine the most suitable gene expression system following a decision scheme. This guide addresses the most commonly used and accessible systems and provides brief descriptions of the main gene expression systems' key characteristics to assist decision making. Additionally, information has been included for selected less frequently used "exotic" gene expression systems.

Identifiants

pubmed: 37917580
pii: S2666-1667(23)00539-7
doi: 10.1016/j.xpro.2023.102572
pmc: PMC10643540
pii:
doi:

Types de publication

Journal Article Review

Langues

eng

Sous-ensembles de citation

IM

Pagination

102572

Informations de copyright

Copyright © 2023 The Authors. Published by Elsevier Inc. All rights reserved.

Déclaration de conflit d'intérêts

Declaration of interests Kim Remans is a member of the STAR Protocols advisory board.

Références

Acta Crystallogr D Biol Crystallogr. 2006 Oct;62(Pt 10):1243-50
pubmed: 17001101
Protein Expr Purif. 2009 Jun;65(2):122-32
pubmed: 19174191
Macromol Biosci. 2012 May;12(5):628-36
pubmed: 22411776
J Mol Biol. 1986 May 5;189(1):113-30
pubmed: 3537305
Nat Rev Mol Cell Biol. 2020 Dec;21(12):729-749
pubmed: 33087899
Methods Enzymol. 2014;536:149-63
pubmed: 24423274
J Biotechnol. 2014 Feb 10;171:61-70
pubmed: 24333123
Nat Biotechnol. 2004 Dec;22(12):1583-7
pubmed: 15568020
Bioengineered. 2015;6(6):316-22
pubmed: 26488462
Sci Rep. 2018 Mar 23;8(1):5083
pubmed: 29572554
Appl Microbiol Biotechnol. 2022 Sep;106(18):5893-5912
pubmed: 36040488
Nat Rev Genet. 2020 Mar;21(3):151-170
pubmed: 31780816
Microb Cell Fact. 2009 May 14;8:26
pubmed: 19442264
Synth Syst Biotechnol. 2021 May 03;6(2):110-119
pubmed: 33997361
Viruses. 2019 Feb 26;11(3):
pubmed: 30813511
Int J Biol Macromol. 2018 Mar;108:999-1009
pubmed: 29113894
J Biosci Bioeng. 2017 Aug;124(2):221-226
pubmed: 28410897
Methods Mol Biol. 2012;801:13-26
pubmed: 21987244
Biol Chem. 2015 Sep;396(9-10):1097-107
pubmed: 25999328
Nat Commun. 2016 May 04;7:11529
pubmed: 27143231
J Biosci Bioeng. 2005 Apr;99(4):303-10
pubmed: 16233795
J Struct Biol. 2018 Aug;203(2):71-80
pubmed: 29545204
Methods Mol Biol. 2018;1850:17-31
pubmed: 30242677
Nat Protoc. 2018 Dec;13(12):2991-3017
pubmed: 30455477
Nat Protoc. 2007;2(10):2632-9
pubmed: 17948006
Methods Mol Biol. 2022;2513:79-112
pubmed: 35781201
Methods Mol Biol. 2018;1764:329-343
pubmed: 29605925
Methods Enzymol. 2021;660:53-80
pubmed: 34742398
Nucleic Acids Res. 2002 Jan 15;30(2):E9
pubmed: 11788735
Angew Chem Int Ed Engl. 2011 Dec 9;50(50):11942-6
pubmed: 22034093
BMC Biotechnol. 2019 Mar 29;19(1):20
pubmed: 30925874
Nat Protoc. 2015 Sep;10(9):1328-44
pubmed: 26270393
J Biotechnol. 2016 Jun 10;227:103-111
pubmed: 27085888
Methods. 2020 Aug 1;180:3-18
pubmed: 32534131
World J Microbiol Biotechnol. 2018 Oct 19;34(11):158
pubmed: 30341583
Protein Cell. 2014 Sep;5(9):658-72
pubmed: 25119489
Methods Enzymol. 2015;556:307-30
pubmed: 25857788
Methods Enzymol. 2021;660:321-339
pubmed: 34742396
Biomolecules. 2023 May 11;13(5):
pubmed: 37238687
PLoS One. 2012;7(4):e34226
pubmed: 22485160
Methods Mol Biol. 2018;1850:57-68
pubmed: 30242680
Proc Natl Acad Sci U S A. 2016 May 10;113(19):E2564-9
pubmed: 27114506
Sci Rep. 2020 Dec 7;10(1):21393
pubmed: 33288836
Methods Mol Biol. 2022;2507:19-39
pubmed: 35773575
Methods Mol Biol. 2015;1261:197-209
pubmed: 25502201
Methods Mol Biol. 2017;1586:197-210
pubmed: 28470606
Methods Mol Biol. 1998;103:1-15
pubmed: 9680629
Microb Cell Fact. 2021 Mar 23;20(1):74
pubmed: 33757505
Protein Sci. 2022 Mar;31(3):639-651
pubmed: 34910339
Methods Mol Biol. 2021;2305:83-104
pubmed: 33950385
N Biotechnol. 2019 Nov 25;53:24-34
pubmed: 31195158
Methods Mol Biol. 2021;2199:95-115
pubmed: 33125646
Biotechnol Lett. 2020 Jul;42(7):1103-1112
pubmed: 32323079
Bioengineering (Basel). 2021 Aug 31;8(9):
pubmed: 34562941
Biol Chem. 2019 Dec 18;401(1):97-116
pubmed: 31539345
Protein Expr Purif. 2020 May;169:105569
pubmed: 31945417
Biotechnol Adv. 2021 Mar-Apr;47:107695
pubmed: 33465474
Front Bioeng Biotechnol. 2021 Dec 14;9:797334
pubmed: 34970535
N Biotechnol. 2018 Jan 25;40(Pt B):245-260
pubmed: 28943390
Proc Natl Acad Sci U S A. 1985 Dec;82(24):8404-8
pubmed: 3878519
Sci Rep. 2017 Jun 16;7(1):3740
pubmed: 28623260
Adv Biochem Eng Biotechnol. 2021;175:93-135
pubmed: 30397726
Microb Cell Fact. 2022 Apr 7;21(1):52
pubmed: 35392897
Nat Biotechnol. 2001 Aug;19(8):751-5
pubmed: 11479568
Biochem Biophys Res Commun. 2010 Jan 1;391(1):931-5
pubmed: 19962965
Methods Mol Biol. 2014;1091:33-53
pubmed: 24203323
Elife. 2020 Nov 25;9:
pubmed: 33236988
Appl Microbiol Biotechnol. 2018 Dec;102(24):10495-10510
pubmed: 30317441
Curr Opin Biotechnol. 1999 Apr;10(2):142-5
pubmed: 10209136
Nat Methods. 2008 Feb;5(2):135-46
pubmed: 18235434
Curr Opin Biotechnol. 2017 Dec;48:77-84
pubmed: 28410475
Adv Biochem Eng Biotechnol. 2021;175:71-92
pubmed: 29886511
Methods Mol Biol. 2010;601:1-16
pubmed: 20099136
Methods Mol Biol. 2012;907:325-40
pubmed: 22907361
BMC Biotechnol. 2020 May 12;20(1):26
pubmed: 32398045
FEBS Lett. 1998 Dec 11;441(1):49-52
pubmed: 9877163
Nanomaterials (Basel). 2020 Aug 12;10(8):
pubmed: 32806511
PLoS One. 2016 Mar 02;11(3):e0149424
pubmed: 26934632
Methods Mol Biol. 2012;831:71-84
pubmed: 22167669
FEMS Microbiol Rev. 2013 Nov;37(6):872-914
pubmed: 23480475
Mol Biotechnol. 2018 Jan;60(1):31-40
pubmed: 29143175
Microb Cell Fact. 2010 Nov 23;9:93
pubmed: 21092289
Biotechnol Adv. 2023 Mar-Apr;63:108079
pubmed: 36528238
Methods Mol Biol. 2017;1586:65-82
pubmed: 28470599
PLoS One. 2019 Jun 6;14(6):e0217878
pubmed: 31170233
Protein Sci. 2019 Aug;28(8):1412-1422
pubmed: 31219641
Essays Biochem. 2021 Jul 26;65(2):293-307
pubmed: 33956085
PLoS Pathog. 2013;9(11):e1003729
pubmed: 24244160
Hum Gene Ther. 1997 Nov 20;8(17):2011-8
pubmed: 9414250
Methods Enzymol. 2021;660:171-190
pubmed: 34742387
Microb Cell Fact. 2005 Dec 13;4:34
pubmed: 16351710
J Struct Funct Genomics. 2013 Dec;14(4):135-44
pubmed: 24057978
Adv Biochem Eng Biotechnol. 2021;175:37-69
pubmed: 29532110
PLoS One. 2015 Aug 11;10(8):e0132898
pubmed: 26263512
J Biotechnol. 2015 Dec 20;216:67-75
pubmed: 26476358
J Mol Biol. 2021 Jun 25;433(13):166964
pubmed: 33781758
ACS Chem Biol. 2021 Oct 15;16(10):1941-1950
pubmed: 33596046
Proc Natl Acad Sci U S A. 2013 Mar 26;110(13):5004-9
pubmed: 23476064
Mol Biotechnol. 2019 May;61(5):365-384
pubmed: 30805909
Methods Mol Biol. 2022;2446:181-203
pubmed: 35157274
Cell Mol Life Sci. 2014 Dec;71(24):4895-4910
pubmed: 25012698
Proc Natl Acad Sci U S A. 2011 Jan 25;108(4):1531-6
pubmed: 21205896
Biotechnol Bioeng. 2020 Aug;117(8):2479-2488
pubmed: 32374435
Nat Protoc. 2014 Nov;9(11):2574-85
pubmed: 25299155
PLoS One. 2015 Dec 23;10(12):e0145887
pubmed: 26697848
Glycoconj J. 2004;21(6):343-60
pubmed: 15514482
J Biotechnol. 2015 Apr 20;200:61-9
pubmed: 25758242
Angew Chem Int Ed Engl. 2020 Dec 21;59(52):23854-23861
pubmed: 32790043
Curr Opin Struct Biol. 2016 Jun;38:129-36
pubmed: 27322762
Nat Commun. 2021 May 14;12(1):2795
pubmed: 33990604
Microb Biotechnol. 2021 Nov;14(6):2566-2580
pubmed: 34405535
Protein Expr Purif. 2005 May;41(1):207-34
pubmed: 15915565
Methods Mol Biol. 2016;1350:95-116
pubmed: 26820855

Auteurs

Anja Schütz (A)

Max-Delbrück-Center for Molecular Medicine in the Helmholtz Association (MDC), Technology Platform for Protein Production & Characterization, Robert-Rössle-Str. 10, 13125 Berlin, Germany.

Frank Bernhard (F)

Institute of Biophysical Chemistry, Centre of Biomolecular Magnetic Resonance, Goethe-University of Frankfurt, Max-von-Laue-Str. 9, 60438 Frankfurt am Main, Germany.

Nick Berrow (N)

Protein Expression Core Facility, Institute for Research in Biomedicine (IRB Barcelona), Barcelona Institute of Science and Technology, Baldiri Reixac 10, 08028 Barcelona, Spain.

Johannes F Buyel (JF)

Univeristy of Natural Resources and Life Sciences, Vienna (BOKU), Department of Biotechnology (DBT), Institute of Bioprocess Science and Engineering (IBSE), Muthgasse 18, 1190 Vienna, Austria.

Frederico Ferreira-da-Silva (F)

Instituto de Biologia Molecular e Celular (IBMC) and Instituto de Investigação e Inovação em Saúde (i3S), Universidade do Porto, Porto, Portugal.

Jurgen Haustraete (J)

VIB, Center for Inflammation Research & Ugent, Department of Biomedical Molecular Biology, Technologiepark-Zwijnaarde 71, 9052 Ghent, Belgium.

Joop van den Heuvel (J)

Helmholtz Centre for Infection Research (HZI), Department of Structure and Function of Proteins, Inhoffenstrasse 7, 38124 Braunschweig, Germany.

Jan-Erik Hoffmann (JE)

Protein Chemistry Facility, Max-Planck-Institute of Molecular Physiology, Otto-Hahn-Str. 11, 44227 Dortmund, Germany.

Ario de Marco (A)

Laboratory of Environmental and Life Sciences, University of Nova Gorica, Vipavska Cesta 13, 5000 Nova Gorica, Slovenia.

Yoav Peleg (Y)

Structural Proteomics Unit (SPU), Department of Life Sciences Core Facilities (LSCF), Weizmann Institute of Science, Rehovot 7610001, Israel.

Sabine Suppmann (S)

Protein Expression and Purification Core Facility, Max-Planck-Institute of Biochemistry, Am Klopferspitz 18, 82152 Martinsried, Germany.

Tamar Unger (T)

Structural Proteomics Unit (SPU), Department of Life Sciences Core Facilities (LSCF), Weizmann Institute of Science, Rehovot 7610001, Israel.

Martine Vanhoucke (M)

BCCM/GeneCorner Plasmid Collection, Department of Biomedical Molecular Biology, Ghent University, Technologiepark-Zwijnaarde 71, 9052 Gent, Belgium.

Susanne Witt (S)

Centre for Structural Systems Biology (CSSB), University Medical Center Hamburg-Eppendorf (UKE), Notkestr. 85, 22607 Hamburg, Germany.

Kim Remans (K)

European Molecular Biology Laboratory (EMBL), Protein Expression and Purification Core Facility, Meyerhofstrasse 1, 69117 Heidelberg, Germany. Electronic address: kim.remans@embl.de.

Classifications MeSH