Exploring a frequency-domain attention-guided cascade U-Net: Towards spatially tunable segmentation of vasculature.

Abdominal aortic aneurysm Convolutional neural network Frequency-domain attention Intracranial aneurysm Tunable segmentation

Journal

Computers in biology and medicine
ISSN: 1879-0534
Titre abrégé: Comput Biol Med
Pays: United States
ID NLM: 1250250

Informations de publication

Date de publication:
Dec 2023
Historique:
received: 17 08 2023
revised: 14 10 2023
accepted: 27 10 2023
medline: 27 11 2023
pubmed: 7 11 2023
entrez: 6 11 2023
Statut: ppublish

Résumé

Developing fully automatic and highly accurate medical image segmentation methods is critically important for vascular disease diagnosis and treatment planning. Although advances in convolutional neural networks (CNNs) have spawned an array of automatic segmentation models converging to saturated high performance, none have explored whether CNNs can achieve (spatially) tunable segmentation. As a result, we propose multiple attention modules from a frequency-domain perspective to construct a unified CNN architecture for segmenting vasculature with desired (spatial) scales. The proposed CNN architecture is named frequency-domain attention-guided cascaded U-Net (FACU-Net). Specifically, FACU-Net contains two innovative components: (1) a frequency-domain-based channel attention module that adaptively tunes channel-wise feature responses and (2) a frequency-domain-based spatial attention module that enables the deep network to concentrate on foreground regions of interest (ROIs) effectively. Furthermore, we devised a novel frequency-domain-based content attention module to enhance or weaken the high (spatial) frequency information, allowing us to strengthen or eliminate vessels of interest. Extensive experiments using clinical data from patients with intracranial aneurysms (IA) and abdominal aortic aneurysms (AAA) demonstrated that the proposed FACU-Net met its design goal. In addition, we further investigated the association between varying (spatial) frequency components and the desirable vessel size/scale attributes. In summary, our preliminary findings are encouraging, and further developments may lead to deployable image segmentation models that are spatially tunable for clinical applications.

Identifiants

pubmed: 37931523
pii: S0010-4825(23)01113-7
doi: 10.1016/j.compbiomed.2023.107648
pii:
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

107648

Informations de copyright

Copyright © 2023 Elsevier Ltd. All rights reserved.

Déclaration de conflit d'intérêts

Declaration of competing interest We wish to confirm that there are no known conflicts of interest associated with this publication and there has been no significant financial support for this work that could have influenced its outcome. We confirm that the manuscript has been read and approved by all named authors and that there are no other persons who satisfied the criteria for authorship but are not listed. We further confirm that the order of authors listed in the manuscript has been approved by all of us. We confirm that we have given due consideration to the protection of intellectual property associated with this work and that there are no impediments to publication, including the timing of publication, with respect to intellectual property. In so doing we confirm that we have followed the regulations of our institutions concerning intellectual property.

Auteurs

Nan Mu (N)

Department of Biomedical Engineering, Michigan Technological University, Houghton, MI, 49931, USA; School of Computer Science, Sichuan Normal University, Chengdu, 610101, China.

Zonghan Lyu (Z)

Department of Biomedical Engineering, Michigan Technological University, Houghton, MI, 49931, USA.

Xiaoming Zhang (X)

Mayo Clinic, Rochester, MN, 55902, USA.

Robert McBane (R)

Mayo Clinic, Rochester, MN, 55902, USA.

Aditya S Pandey (AS)

Department of Neurosurgery, University of Michigan, Ann Arbor, MI, 48105, USA.

Jingfeng Jiang (J)

Department of Biomedical Engineering, Michigan Technological University, Houghton, MI, 49931, USA; Center for Biocomputing and Digital Health, Health Research Institute and Institute of Computing and Cybernetics, Michigan Technological University, Houghton, MI, 49931, USA. Electronic address: jjiang1@mtu.edu.

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