Prognostic and immunotherapeutic significance of immunogenic cell death-related genes in colon adenocarcinoma patients.


Journal

Scientific reports
ISSN: 2045-2322
Titre abrégé: Sci Rep
Pays: England
ID NLM: 101563288

Informations de publication

Date de publication:
06 11 2023
Historique:
received: 23 03 2023
accepted: 03 11 2023
medline: 8 11 2023
pubmed: 7 11 2023
entrez: 6 11 2023
Statut: epublish

Résumé

In recent years, genes associated with immunogenic cell death (ICD)-related genes have garnered significant interest as potential targets for immunotherapy. As a frontier in cancer treatment, immunotherapy has notably enhanced the therapeutic outcomes for cancer patients. However, since only a subset of patients benefits from this treatment approach, there is an imperative need for biomarker research to enhance patient sensitivity to immunotherapy. Expression of ICD-related genes and clinical patient data were sourced from The Cancer Genome Atlas (TCGA) database. Utilizing univariate Cox regression analysis, we constructed a signature for predicting the overall survival of colon adenocarcinoma (COAD) patients. A genomic feature analysis was performed, incorporating tumor mutation burden (TMB) and copy number variation (CNV). The immunological characteristics were analyzed via the ssGSEA and GSEA algorithms, with the resulting data visualized using R software (version 4.2.1). According to the univariate regression analysis for COAD, AIM2 emerged as the gene most significantly associated with overall survival among the 32 ICD-related genes in the TCGA dataset. Patients were divided into two groups based on high or low AIM2 expression, and genomic differences between the groups were explored. Patients expressing high levels of AIM2 had a higher TMB and a lower CNV. In addition, these patients had elevated immune checkpoint, immune cell, and immune function scores, thus indicating increased sensitivity to immunotherapy. TIDE analysis further confirmed that these patients were likely to respond more effectively to immunotherapy. Subclass mapping analysis corroborated our findings, demonstrating that patients with high AIM2 expression responded more positively to immunotherapy. Additionally, our study found that the suppression of AIM2 could significantly enhance the proliferation, invasion, and migration capabilities of colon cancer cells. In this research, we identified a novel prognostic signature suggesting that patients with higher AIM2 expression levels are more likely to respond favorably to immunotherapy.

Identifiants

pubmed: 37932362
doi: 10.1038/s41598-023-46675-y
pii: 10.1038/s41598-023-46675-y
pmc: PMC10628212
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

19188

Informations de copyright

© 2023. The Author(s).

Références

JAMA Oncol. 2021 Feb 1;7(2):316
pubmed: 33331847
Methods Mol Biol. 2016;1418:111-41
pubmed: 27008012
Annu Rev Immunol. 2019 Apr 26;37:457-495
pubmed: 30676822
Nucleic Acids Res. 2023 Jan 6;51(D1):D587-D592
pubmed: 36300620
CA Cancer J Clin. 2022 Jan;72(1):7-33
pubmed: 35020204
CA Cancer J Clin. 2021 May;71(3):209-249
pubmed: 33538338
Nucleic Acids Res. 2015 Apr 20;43(7):e47
pubmed: 25605792
Drug Discov Today. 2020 Jan;25(1):223-229
pubmed: 31738877
Pharmacotherapy. 2015 Oct;35(10):963-76
pubmed: 26497482
Proc Natl Acad Sci U S A. 2005 Oct 25;102(43):15545-50
pubmed: 16199517
Cancer Control. 2022 Jan-Dec;29:10732748221129451
pubmed: 36283420
Aging (Albany NY). 2020 Sep 30;12(18):18099-18126
pubmed: 32996894
Sci Signal. 2013 Apr 02;6(269):pl1
pubmed: 23550210
Med Clin North Am. 1990 Jan;74(1):201-18
pubmed: 2404177
Cell. 2018 Apr 5;173(2):338-354.e15
pubmed: 29625051
Front Cell Dev Biol. 2022 Apr 26;10:903781
pubmed: 35557952
J Healthc Eng. 2022 Apr 7;2022:8756844
pubmed: 35432843
Front Immunol. 2022 Apr 11;13:782982
pubmed: 35479097
Nat Med. 2007 Jan;13(1):54-61
pubmed: 17187072
Nat Rev Clin Oncol. 2021 Feb;18(2):85-100
pubmed: 32934330
Annu Rev Pathol. 2020 Jan 24;15:123-147
pubmed: 31530089
Nat Rev Cancer. 2005 Nov;5(11):899-904
pubmed: 16327766
Mol Med Rep. 2022 Feb;25(2):
pubmed: 34913077
Nat Rev Immunol. 2017 Feb;17(2):97-111
pubmed: 27748397
Annu Rev Immunol. 2013;31:51-72
pubmed: 23157435
Front Endocrinol (Lausanne). 2021 May 27;12:656106
pubmed: 34122335
CPT Pharmacometrics Syst Pharmacol. 2013 Oct 16;2:e79
pubmed: 24132163
Front Immunol. 2021 Nov 19;12:781466
pubmed: 34868055
Nat Genet. 2013 Jun;45(6):580-5
pubmed: 23715323
Nat Med. 2020 Apr;26(4):566-576
pubmed: 32251400
Ann Oncol. 2012 Sep;23 Suppl 8:viii6-9
pubmed: 22918931
PLoS One. 2007 Nov 21;2(11):e1195
pubmed: 18030330
Genome Med. 2020 Feb 26;12(1):21
pubmed: 32102694
J Exp Clin Cancer Res. 2020 Jan 3;39(1):5
pubmed: 31900207
Nat Rev Clin Oncol. 2010 May;7(5):251-65
pubmed: 20351699
Cancer Cell. 2020 Nov 9;38(5):734-747.e9
pubmed: 32888432
Methods Mol Biol. 2018;1711:243-259
pubmed: 29344893
BMC Bioinformatics. 2013 Jan 16;14:7
pubmed: 23323831
Science. 2015 Apr 3;348(6230):69-74
pubmed: 25838375
Protein Sci. 2019 Nov;28(11):1947-1951
pubmed: 31441146
Nucleic Acids Res. 2000 Jan 1;28(1):27-30
pubmed: 10592173
Medicine (Baltimore). 2016 Sep;95(1 Suppl 1):S20-S25
pubmed: 27611935
Clin Colon Rectal Surg. 2009 Nov;22(4):191-7
pubmed: 21037809
Nat Commun. 2019 Jul 26;10(1):3349
pubmed: 31350406

Auteurs

Jun Xu (J)

Department of Basic Courses, Anhui Medical College, Hefei, 230032, Anhui, China.
Department of Pathology, Hefei First People's Hospital, Hefei, 230001, Anhui, China.

Jun Yang (J)

Department of Basic Courses, Anhui Medical College, Hefei, 230032, Anhui, China.

Xianzhu Pan (X)

Department of Basic Courses, Anhui Medical College, Hefei, 230032, Anhui, China.

Jian Wang (J)

Department of Basic Courses, Anhui Medical College, Hefei, 230032, Anhui, China. xujunahyz@126.com.
Department of Pathology, Hefei First People's Hospital, Hefei, 230001, Anhui, China. xujunahyz@126.com.

Articles similaires

[Redispensing of expensive oral anticancer medicines: a practical application].

Lisanne N van Merendonk, Kübra Akgöl, Bastiaan Nuijen
1.00
Humans Antineoplastic Agents Administration, Oral Drug Costs Counterfeit Drugs

Smoking Cessation and Incident Cardiovascular Disease.

Jun Hwan Cho, Seung Yong Shin, Hoseob Kim et al.
1.00
Humans Male Smoking Cessation Cardiovascular Diseases Female
Humans United States Aged Cross-Sectional Studies Medicare Part C
1.00
Humans Yoga Low Back Pain Female Male

Classifications MeSH