Deleterious genetic changes in AGTPBP1 result in teratozoospermia with sperm head and flagella defects.

AGTPBP1 genetic changes male infertility teratozoospermia whole-exome sequencing

Journal

Journal of cellular and molecular medicine
ISSN: 1582-4934
Titre abrégé: J Cell Mol Med
Pays: England
ID NLM: 101083777

Informations de publication

Date de publication:
08 Nov 2023
Historique:
revised: 23 10 2023
received: 20 04 2023
accepted: 28 10 2023
medline: 8 11 2023
pubmed: 8 11 2023
entrez: 8 11 2023
Statut: aheadofprint

Résumé

Approximately 10%-15% of couples worldwide are infertile, and male factors account for approximately half of these cases. Teratozoospermia is a major cause of male infertility. Although various mutations have been identified in teratozoospermia, these can vary among ethnic groups. In this study, we performed whole-exome sequencing to identify genetic changes potentially causative of teratozoospermia. Out of seven genes identified, one, ATP/GTP Binding Protein 1 (AGTPBP1), was characterized, and three missense changes were identified in two patients (Affected A: p.Glu423Asp and p.Pro631Leu; Affected B: p.Arg811His). In those two cases, severe sperm head and tail defects were observed. Moreover, AGTPBP1 localization showed a fragmented pattern compared to control participants, with specific localization in the neck and annulus regions. Using murine models, we found that AGTPBP1 is localized in the manchette structure, which is essential for sperm structure formation. Additionally, in Agtpbp1-null mice, we observed sperm head and tail defects similar to those in sperm from AGTPBP1-mutated cases, along with abnormal polyglutamylation tubulin and decreasing △-2 tubulin levels. In this study, we established a link between genetic changes in AGTPBP1 and human teratozoospermia for the first time and identified the role of AGTPBP1 in deglutamination, which is crucial for sperm formation.

Identifiants

pubmed: 37937809
doi: 10.1111/jcmm.18031
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Subventions

Organisme : Cardinal Tien Hospital
ID : CTH-112A-2209
Organisme : Ministry of Science and Technology of the Republic of China
ID : MOST 109-2320-B-030-002-; MOST 110-2320-B-030-002-
Organisme : National Science and Technology Council in Taiwan
ID : NSTC 111-2320-B-030 -007-MY3

Informations de copyright

© 2023 The Authors. Journal of Cellular and Molecular Medicine published by Foundation for Cellular and Molecular Medicine and John Wiley & Sons Ltd.

Références

Vayena ERP, Griffin PD. Current Practices & Controversies in Assisted Reproduction: Report of a WHO Meeting. Switzerland WHO; 2001.
Boivin J, Bunting L, Collins JA, Nygren KG. International estimates of infertility prevalence and treatment-seeking: potential need and demand for infertility medical care. Hum Reprod. 2007;22(6):1506-1512. doi:10.1093/humrep/dem046
Agarwal A, Baskaran S, Parekh N, et al. Male infertility. Lancet. 2021;397(10271):319-333. doi:10.1016/S0140-6736
Krausz C, Riera-Escamilla A. Genetics of male infertility. Nat Rev Urol. 2018;15(6):369-384. doi:10.1038/s41585-018-0003-3
Ammar O, Mehdi M, Muratori M. Teratozoospermia: its association with sperm DNA defects, apoptotic alterations, and oxidative stress. Andrology. 2020;8(5):1095-1106. doi:10.1111/andr.12778
Shabtaie SA, Gerkowicz SA, Kohn TP, Ramasamy R. Role of abnormal sperm morphology in predicting pregnancy outcomes. Curr Urol rep. 2016;17(9):67:67. doi:10.1007/s11934-016-0623-1
Coutton C, Escoffier J, Martinez G, Arnoult C, Ray PF. Teratozoospermia: spotlight on the main genetic actors in the human. Hum Reprod Update. 2015;21(4):455-485. doi:10.1093/humupd/dmv020
Houston BJ, Riera-Escamilla A, Wyrwoll MJ, et al. A systematic review of the validated monogenic causes of human male infertility: 2020 update and a discussion of emerging gene-disease relationships. Hum Reprod Update. 2021;28(1):15-29. doi:10.1093/humupd/dmab030
Wang YY, Lai TH, Chen MF, Lee HL, Kuo PL, Lin YH. SEPT14 mutations and Teratozoospermia: genetic effects on sperm head morphology and DNA integrity. J Clin Med. 2019;8(9):1297. doi:10.3390/jcm8091297
Amiri-Yekta A, Coutton C, Kherraf ZE, et al. Whole-exome sequencing of familial cases of multiple morphological abnormalities of the sperm flagella (MMAF) reveals new DNAH1 mutations. Hum Reprod. 2016;31(12):2872-2880. doi:10.1093/humrep/dew262
Moore DJ, Onoufriadis A, Shoemark A, et al. Mutations in ZMYND10, a gene essential for proper axonemal assembly of inner and outer dynein arms in humans and flies, cause primary ciliary dyskinesia. Am J Hum Genet. 2013;93(2):346-356. doi:10.1016/j.ajhg.2013.07.009
Oud MS, Okutman O, Hendricks LAJ, et al. Exome sequencing reveals novel causes as well as new candidate genes for human globozoospermia. Hum Reprod. 2020;35(1):240-252. doi:10.1093/humrep/dez246
Harris A, Morgan JI, Pecot M, Soumare A, Osborne A, Soares HD. Regenerating motor neurons express Nna1, a novel ATP/GTP-binding protein related to zinc carboxypeptidases. Mol Cell Neurosci. 2000;16(5):578-596. doi:10.1006/mcne.2000.0900
Wu HY, Rong Y, Correia K, Min J, Morgan JI. Comparison of the enzymatic and functional properties of three cytosolic carboxypeptidase family members. J Biol Chem. 2015;290(2):1222-1232. doi:10.1074/jbc.M114.604850
Kuo YC, Shen YR, Chen HI, et al. SEPT12 orchestrates the formation of mammalian sperm annulus by organizing core octameric complexes with other SEPT proteins. J Cell Sci. 2015;128(5):923-934. doi:10.1242/jcs.158998
Rogowski K, van Dijk J, Magiera MM, et al. A family of protein-deglutamylating enzymes associated with neurodegeneration. Cell. 2010;143(4):564-578. doi:10.1016/j.cell.2010.10.014
Bosch Grau M, Gonzalez Curto G, Rocha C, et al. Tubulin glycylases and glutamylases have distinct functions in stabilization and motility of ependymal cilia. J Cell Biol. 2013;202(3):441-451. doi:10.1083/jcb.201305041
Mahalingan KK, Keith Keenan E, Strickland M, et al. Structural basis for polyglutamate chain initiation and elongation by TTLL family enzymes. Nat Struct Mol Biol. 2020;27(9):802-813. doi:10.1038/s41594-020-0462-0
Shashi V, Magiera MM, Klein D, et al. Loss of tubulin deglutamylase CCP1 causes infantile-onset neurodegeneration. EMBO J. 2018;37(23):e100540. doi:10.15252/embj.2018100540
Fernandez-Gonzalez A, La Spada AR, Treadaway J, et al. Purkinje cell degeneration (pcd) phenotypes caused by mutations in the axotomy-induced gene, Nna1. Science. 2002;295(5561):1904-1906. doi:10.1126/science.1068912
Kim N, Xiao R, Choi H, et al. Abnormal sperm development in pcd(3J)−/− mice: the importance of Agtpbp1 in spermatogenesis. Mol Cells. 2011;31(1):39-48. doi:10.1007/s10059-011-0002-1
Dunleavy JEM, O'Bryan MK, Stanton PG, O'Donnell L. The cytoskeleton in spermatogenesis. Reproduction. 2019;157(2):R53-R72. doi:10.1530/REP-18-0457
Tang EI, Mruk DD, Cheng CY. Regulation of microtubule (MT)-based cytoskeleton in the seminiferous epithelium during spermatogenesis. Semin Cell Dev Biol. 2016;59:35-45. doi:10.1016/j.semcdb.2016.01.004
World Health Organisation. WHO Laboratory Manual for the Examination and Processing of Human Semen, 5th ed. World Health Organization; 2010.
Wilfert AB, Chao KR, Kaushal M, et al. Genome-wide significance testing of variation from single case exomes. Nat Genet. 2016;48(12):1455-1461. doi:10.1038/ng.3697
Mirdita M, Schutze K, Moriwaki Y, Heo L, Ovchinnikov S, Steinegger M. ColabFold: making protein folding accessible to all. Nat Methods. 2022;19(6):679-682. doi:10.1038/s41592-022-01488-1
Uhlen M, Fagerberg L, Hallstrom BM, et al. Proteomics. Tissue-based map of the human proteome. Science. 2015;347(6220):1260419. doi:10.1126/science.1260419
Lin YH, Lin YM, Wang YY, et al. The expression level of septin12 is critical for spermiogenesis. Am J Pathol. 2009;174(5):1857-1868. doi:10.2353/ajpath.2009.080955
Lee JD, Allen MJ, Balhorn R. Atomic force microscope analysis of chromatin volumes in human sperm with head-shape abnormalities. Biol Reprod. 1997;56(1):42-49.
Grove DE, Rosser MF, Watkins RL, Cyr DM. Analysis of CFTR folding and degradation in transiently transfected cells. Methods Mol Biol. 2011;741:219-232. doi:10.1007/978-1-61779-117-8_15
Berezniuk I, Vu HT, Lyons PJ, et al. Cytosolic carboxypeptidase 1 is involved in processing alpha- and beta-tubulin. J Biol Chem. 2012;287(9):6503-6517. doi:10.1074/jbc.M111.309138
Karakaya M, Paketci C, Altmueller J, et al. Biallelic variant in AGTPBP1 causes infantile lower motor neuron degeneration and cerebellar atrophy. Am J Med Genet A. 2019;179(8):1580-1584. doi:10.1002/ajmg.a.61198
Habedanck R, Stierhof YD, Wilkinson CJ, Nigg EA. The polo kinase Plk4 functions in centriole duplication. Nat Cell Biol. 2005;7(11):1140-1146. doi:10.1038/ncb1320
Miyamoto T, Bando Y, Koh E, et al. A PLK4 mutation causing azoospermia in a man with Sertoli cell-only syndrome. Andrology. 2016;4(1):75-81. doi:10.1111/andr.12113
Harris RM, Weiss J, Jameson JL. Male hypogonadism and germ cell loss caused by a mutation in polo-like kinase 4. Endocrinology. 2011;152(10):3975-3985. doi:10.1210/en.2011-1106
Don J, Wolgemuth DJ. Identification and characterization of the regulated pattern of expression of a novel mouse gene, meg1, during the meiotic cell cycle. Cell Growth Differ. 1992;3(8):495-505.
Zhang Z, Shen X, Gude DR, et al. MEIG1 is essential for spermiogenesis in mice. Proc Natl Acad Sci U S A. 2009;106(40):17055-17060. doi:10.1073/pnas.0906414106
Sheffer R, Gur M, Brooks R, et al. Biallelic variants in AGTPBP1, involved in tubulin deglutamylation, are associated with cerebellar degeneration and motor neuropathy. Eur J Hum Genet. 2019;27(9):1419-1426. doi:10.1038/s41431-019-0400-y
Keller N, Paketci C, Altmueller J, et al. Genomic variants causing mitochondrial dysfunction are common in hereditary lower motor neuron disease. Hum Mutat. 2021;42(4):460-472. doi:10.1002/humu.24181
Mullen RJ, Eicher EM, Sidman RL. Purkinje cell degeneration, a new neurological mutation in the mouse. Proc Natl Acad Sci U S A. 1976;73(1):208-212. doi:10.1073/pnas.73.1.208
Landis SC, Mullen RJ. The development and degeneration of Purkinje cells in pcd mutant mice. J Comp Neurol. 1978;177(1):125-143. doi:10.1002/cne.901770109
Chakrabarti L, Neal JT, Miles M, et al. The Purkinje cell degeneration 5J mutation is a single amino acid insertion that destabilizes Nna1 protein. Mamm Genome. 2006;17(2):103-110. doi:10.1007/s00335-005-0096-x
Audebert S, Desbruyeres E, Gruszczynski C, et al. Reversible polyglutamylation of alpha- and beta-tubulin and microtubule dynamics in mouse brain neurons. Mol Biol Cell. 1993;4(6):615-626. doi:10.1091/mbc.4.6.615
Janke C, Rogowski K, Wloga D, et al. Tubulin polyglutamylase enzymes are members of the TTL domain protein family. Science. 2005;308(5729):1758-1762. doi:10.1126/science.1113010
Kalinina E, Biswas R, Berezniuk I, Hermoso A, Aviles FX, Fricker LD. A novel subfamily of mouse cytosolic carboxypeptidases. FASEB J. 2007;21(3):836-850. doi:10.1096/fj.06-7329com
Pleuger C, Lehti MS, Dunleavy JE, Fietz D, O'Bryan MK. Haploid male germ cells-the grand Central Station of protein transport. Human Reproduction Update. 2020;26(4):474-500. doi:10.1093/humupd/dmaa004

Auteurs

Yu-Hua Lin (YH)

Division of Urology, Department of Surgery, Cardinal Tien Hospital, New Taipei, Taiwan.
Department of Chemistry, Fu Jen Catholic University, New Taipei City, Taiwan.

Ya-Yun Wang (YY)

Graduate Institute of Biomedical and Pharmaceutical Science, Fu Jen Catholic University, New Taipei City, Taiwan.

Tsung-Hsuan Lai (TH)

Department of Obstetrics and Gynecology, Cathay General Hospital, Taipei, Taiwan.
School of Medicine, Fu Jen Catholic University, New Taipei City, Taiwan.

Jih-Lung Teng (JL)

Graduate Institute of Biomedical and Pharmaceutical Science, Fu Jen Catholic University, New Taipei City, Taiwan.

Chi-Wei Lin (CW)

Graduate Institute of Biomedical and Pharmaceutical Science, Fu Jen Catholic University, New Taipei City, Taiwan.

Chih-Chun Ke (CC)

Department of Urology, En Chu Kong Hospital, New Taipei City, Taiwan.

I-Shing Yu (IS)

Laboratory Animal Center, College of Medicine, National Taiwan University, Taipei, Taiwan.

Hui-Ling Lee (HL)

Department of Chemistry, Fu Jen Catholic University, New Taipei City, Taiwan.

Chying-Chyuan Chan (CC)

Department of Obstetrics and Gynecology, Taipei City Hospital, Zhongxing Branch and Branch for Women and Children, Taipei, Taiwan.

Chi-Hua Tung (CH)

Program of Artificial Intelligence & Information Security, Fu Jen Catholic University, New Taipei City, Taiwan.

Donald F Conrad (DF)

Division of Genetics, Oregon National Primate Research Center, Beaverton, Oregon, USA.

Moira K O'Bryan (MK)

School of BioSciences and Bio21 Institute, The University of Melbourne, Parkville, Victoria, Australia.

Ying-Hung Lin (YH)

Graduate Institute of Biomedical and Pharmaceutical Science, Fu Jen Catholic University, New Taipei City, Taiwan.

Classifications MeSH