Metagenome-assembled genomes from High Arctic glaciers highlight the vulnerability of glacier-associated microbiota and their activities to habitat loss.
Metagenome-assembled genomes
Svalbard
co-factor metabolism
cryoconite
glacier
Journal
Microbial genomics
ISSN: 2057-5858
Titre abrégé: Microb Genom
Pays: England
ID NLM: 101671820
Informations de publication
Date de publication:
Nov 2023
Nov 2023
Historique:
medline:
9
11
2023
pubmed:
8
11
2023
entrez:
8
11
2023
Statut:
ppublish
Résumé
The rapid warming of the Arctic is threatening the demise of its glaciers and their associated ecosystems. Therefore, there is an urgent need to explore and understand the diversity of genomes resident within glacial ecosystems endangered by human-induced climate change. In this study we use genome-resolved metagenomics to explore the taxonomic and functional diversity of different habitats within glacier-occupied catchments. Comparing different habitats within such catchments offers a natural experiment for understanding the effects of changing habitat extent or even loss upon Arctic microbiota. Through binning and annotation of metagenome-assembled genomes (MAGs) we describe the spatial differences in taxon distribution and their implications for glacier-associated biogeochemical cycling. Multiple taxa associated with carbon cycling included organisms with the potential for carbon monoxide oxidation. Meanwhile, nitrogen fixation was mediated by a single taxon, although diverse taxa contribute to other nitrogen conversions. Genes for sulphur oxidation were prevalent within MAGs implying the potential capacity for sulphur cycling. Finally, we focused on cyanobacterial MAGs, and those within cryoconite, a biodiverse microbe-mineral granular aggregate responsible for darkening glacier surfaces. Although the metagenome-assembled genome of
Identifiants
pubmed: 37937832
doi: 10.1099/mgen.0.001131
pmc: PMC10711321
doi:
Substances chimiques
Sulfur
70FD1KFU70
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Références
Microb Genom. 2016 Sep 20;2(9):e000086
pubmed: 28785418
Curr Opin Biotechnol. 2018 Feb;49:100-107
pubmed: 28843191
Bioinformatics. 2015 May 15;31(10):1674-6
pubmed: 25609793
Nat Biotechnol. 2018 Nov;36(10):996-1004
pubmed: 30148503
Nat Microbiol. 2017 Nov;2(11):1533-1542
pubmed: 28894102
Nat Commun. 2019 Aug 15;10(1):3567
pubmed: 31417076
Science. 2023 Jan 6;379(6627):78-83
pubmed: 36603094
Environ Microbiol. 2017 Feb;19(2):551-565
pubmed: 27511455
Nucleic Acids Res. 2000 Jan 1;28(1):27-30
pubmed: 10592173
FEMS Microbiol Ecol. 2019 Dec 1;95(12):
pubmed: 31697309
Mol Ecol. 2016 Aug;25(15):3752-67
pubmed: 27261672
Nat Ecol Evol. 2019 Dec;3(12):1675-1685
pubmed: 31740846
Nat Commun. 2016 Apr 13;7:11257
pubmed: 27071849
FEMS Microbiol Ecol. 2012 Nov;82(2):254-67
pubmed: 22168226
ISME J. 2010 Sep;4(9):1087-90
pubmed: 20631804
Nat Microbiol. 2018 Jul;3(7):836-843
pubmed: 29807988
FEMS Microbiol Ecol. 2020 Oct 20;96(11):
pubmed: 32990745
Nat Biotechnol. 2022 Sep;40(9):1341-1348
pubmed: 35760913
Front Microbiol. 2015 Oct 13;6:1070
pubmed: 26528250
ISME J. 2013 Sep;7(9):1814-26
pubmed: 23552623
Bioinformatics. 2016 Feb 15;32(4):605-7
pubmed: 26515820
Nature. 2023 Aug;620(7974):562-569
pubmed: 37587299
Bioinformatics. 2014 Aug 1;30(15):2114-20
pubmed: 24695404
Nat Commun. 2020 Sep 2;11(1):4403
pubmed: 32879312
Proc Natl Acad Sci U S A. 2013 Apr 2;110(14):5540-5
pubmed: 23509275
Microbiome. 2022 Mar 23;10(1):50
pubmed: 35317857
Bioinformatics. 2017 Jun 9;33(19):3137-3139
pubmed: 28605449
mBio. 2020 Nov 24;11(6):
pubmed: 33234687
Nat Methods. 2014 Nov;11(11):1144-6
pubmed: 25218180
ISME J. 2012 Dec;6(12):2302-13
pubmed: 23018772
Nat Ecol Evol. 2020 May;4(5):686-687
pubmed: 32231325
Environ Microbiol. 2012 Nov;14(11):2998-3012
pubmed: 23016868
Microb Genom. 2020 May;6(5):
pubmed: 32392124
Proc Biol Sci. 2014 Nov 22;281(1795):
pubmed: 25274358
Cytometry A. 2014 Jan;85(1):3-7
pubmed: 24273193
Sci Rep. 2022 Jun 15;12(1):9371
pubmed: 35705593
Bioinformatics. 2016 Sep 15;32(18):2847-9
pubmed: 27207943
Appl Environ Microbiol. 2006 Sep;72(9):5838-45
pubmed: 16957202
Nat Commun. 2016 Oct 24;7:13219
pubmed: 27774985
Nucleic Acids Res. 2001 Jan 1;29(1):22-8
pubmed: 11125040
Nature. 2022 Jan;601(7893):374-379
pubmed: 35046605
ISME J. 2017 Jun;11(6):1434-1446
pubmed: 28186498
Bioinformatics. 2019 Oct 15;35(20):4162-4164
pubmed: 30865266
FEMS Microbiol Ecol. 2007 Feb;59(2):307-17
pubmed: 17313580
NPJ Biofilms Microbiomes. 2016 Jun 08;2:16008
pubmed: 28721245
Genome Res. 2015 Jul;25(7):1043-55
pubmed: 25977477
Appl Environ Microbiol. 2011 Jul;77(14):4778-87
pubmed: 21622799
ISME J. 2011 Jan;5(1):150-60
pubmed: 20664552
BMC Genomics. 2016 Aug 02;17:533
pubmed: 27485510
FEMS Microbiol Ecol. 2014 Aug;89(2):222-37
pubmed: 24433483
Mol Ecol. 2010 Mar;19 Suppl 1:54-66
pubmed: 20331770
PLoS One. 2010 Mar 10;5(3):e9490
pubmed: 20224823
Nucleic Acids Res. 2002 Apr 1;30(7):1575-84
pubmed: 11917018
Nature. 2015 Jul 9;523(7559):208-11
pubmed: 26083755
Nature. 2018 Aug;560(7716):49-54
pubmed: 30013118
BMC Bioinformatics. 2010 Mar 08;11:119
pubmed: 20211023
Nat Biotechnol. 2018 Jul 6;36(7):566-569
pubmed: 29979655
Bioinformatics. 2019 Nov 15;:
pubmed: 31730192
Nat Commun. 2016 Jun 22;7:11968
pubmed: 27329445
PeerJ. 2015 Oct 08;3:e1319
pubmed: 26500826
FEMS Microbiol Ecol. 2016 Sep;92(9):
pubmed: 27306554
mSystems. 2020 Aug 4;5(4):
pubmed: 32753510
FEMS Microbiol Ecol. 2015 Dec;91(12):
pubmed: 26564957
Environ Microbiol. 2016 Dec;18(12):4674-4686
pubmed: 27113725
Nucleic Acids Res. 2004 Mar 19;32(5):1792-7
pubmed: 15034147
PeerJ. 2015 Aug 27;3:e1165
pubmed: 26336640
Nucleic Acids Res. 2016 Jan 4;44(D1):D286-93
pubmed: 26582926