A dissected non-ribosomal peptide synthetase maintains activity.

Dopamine Drosophila Mass spectrometry (MS) Natural product biosynthesis Non-ribosomal peptide synthetase Peptide biosynthesis Protein-protein interaction Synthetase dissection

Journal

Biochimica et biophysica acta. Proteins and proteomics
ISSN: 1878-1454
Titre abrégé: Biochim Biophys Acta Proteins Proteom
Pays: Netherlands
ID NLM: 101731734

Informations de publication

Date de publication:
01 Jan 2024
Historique:
received: 08 09 2023
revised: 25 10 2023
accepted: 02 11 2023
pubmed: 12 11 2023
medline: 12 11 2023
entrez: 11 11 2023
Statut: ppublish

Résumé

Non-ribosomal peptide synthetases (NRPSs) generate chemically complex compounds and their modular architecture suggests that changing their domain organization can predictably alter their products. Ebony, a small three-domain NRPS, catalyzes the formation of β-alanine containing amides from biogenic amines. To examine the necessity of interdomain interactions, we modeled and docked domains of Ebony to reveal potential interfaces between them. Testing the same domain combinations in vitro showed that 8 % of activity was preserved after Ebony was dissected into a di-domain and a detached C-terminal domain, suggesting that sufficient interaction was maintained after dissection. Our work creates a model to identify domain interfaces necessary for catalysis, an important step toward utilizing Ebony as a combinatorial engineering platform for novel amides.

Identifiants

pubmed: 37951518
pii: S1570-9639(23)00086-9
doi: 10.1016/j.bbapap.2023.140972
pii:
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

140972

Informations de copyright

Copyright © 2023 Elsevier B.V. All rights reserved.

Déclaration de conflit d'intérêts

Declaration of Competing Interest The authors declare the following financial interests/personal relationships which may be considered as potential competing interests: Joris Beld reports financial support was provided by Commonwealth Universal Research Enhancement (CURE) grant.

Auteurs

Amanda J Platt (AJ)

Department of Microbiology and Immunology, Institute of Molecular Medicine and Infectious Disease, Center for Advanced Microbial Processing, Drexel University College of Medicine, Philadelphia, PA, USA.

Shae Padrick (S)

Department of Biochemistry and Molecular Biology, Drexel University College of Medicine, 245 N 15(th) Street, Philadelphia, PA 19102, USA.

Amy T Ma (AT)

Department of Microbiology and Immunology, Institute of Molecular Medicine and Infectious Disease, Center for Advanced Microbial Processing, Drexel University College of Medicine, Philadelphia, PA, USA.

Joris Beld (J)

Department of Microbiology and Immunology, Institute of Molecular Medicine and Infectious Disease, Center for Advanced Microbial Processing, Drexel University College of Medicine, Philadelphia, PA, USA. Electronic address: jb3669@drexel.edu.

Classifications MeSH