GENETTA: a Network-Based Tool for the Analysis of Complex Genetic Designs.

SBOL computer-aided design data analysis genetic design knowledge graph networks

Journal

ACS synthetic biology
ISSN: 2161-5063
Titre abrégé: ACS Synth Biol
Pays: United States
ID NLM: 101575075

Informations de publication

Date de publication:
14 Nov 2023
Historique:
medline: 14 11 2023
pubmed: 14 11 2023
entrez: 14 11 2023
Statut: aheadofprint

Résumé

GENETTA is a software tool that transforms synthetic biology designs into networks using graph theory for analysis and manipulation. By representing complex data as interconnected points, GENETTA allows dynamic customization of visualizations, including interaction networks and parts hierarchies. It can also merge design data from multiple databases, providing a unified perspective. The generated interactive network can be edited by adding nodes and edges, simplifying changes to existing design files. This article presents GENETTA and its features through specific use cases, showcasing its practical applications.

Identifiants

pubmed: 37963232
doi: 10.1021/acssynbio.3c00333
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Auteurs

Matthew Crowther (M)

School of Computing, Newcastle University, Newcastle Upon Tyne, NE4 5TG, United Kingdom.
Centro de Biotecnología y Genómica de Plantas, Universidad Politécnica de Madrid (UPM)-Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA/CSIC), Madrid 28223, Spain.

Anil Wipat (A)

School of Computing, Newcastle University, Newcastle Upon Tyne NE4 5TG, United Kingdom.

Ángel Goñi-Moreno (Á)

Centro de Biotecnología y Genómica de Plantas, Universidad Politécnica de Madrid (UPM)-Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA/CSIC), Madrid 28223, Spain.

Classifications MeSH