Fungal drops: a novel approach for macro- and microscopic analyses of fungal mycelial growth.

bacterial–fungal interactions fungal highways mycelium observation mycological method quantification fractal dimension user-friendly

Journal

microLife
ISSN: 2633-6693
Titre abrégé: Microlife
Pays: England
ID NLM: 9918227365406676

Informations de publication

Date de publication:
2023
Historique:
received: 07 07 2023
revised: 11 10 2023
accepted: 17 10 2023
medline: 15 11 2023
pubmed: 15 11 2023
entrez: 15 11 2023
Statut: epublish

Résumé

This study presents an inexpensive approach for the macro- and microscopic observation of fungal mycelial growth. The 'fungal drops' method allows to investigate the development of a mycelial network in filamentous microorganisms at the colony and hyphal scales. A heterogeneous environment is created by depositing 15-20 µl drops on a hydrophobic surface at a fixed distance. This system is akin to a two-dimensional (2D) soil-like structure in which aqueous-pockets are intermixed with air-filled pores. The fungus (spores or mycelia) is inoculated into one of the drops, from which hyphal growth and exploration take place. Hyphal structures are assessed at different scales using stereoscopic and microscopic imaging. The former allows to evaluate the local response of regions within the colony (modular behaviour), while the latter can be used for fractal dimension analyses to describe the hyphal network architecture. The method was tested with several species to underpin the transferability to multiple species. In addition, two sets of experiments were carried out to demonstrate its use in fungal biology. First, mycelial reorganization of

Identifiants

pubmed: 37965130
doi: 10.1093/femsml/uqad042
pii: uqad042
pmc: PMC10642649
doi:

Types de publication

Journal Article

Langues

eng

Pagination

uqad042

Informations de copyright

© The Author(s) 2023. Published by Oxford University Press on behalf of FEMS.

Déclaration de conflit d'intérêts

None declared.

Références

Environ Sci Technol. 2007 Jan 15;41(2):500-5
pubmed: 17310713
Mycologia. 2008 Nov-Dec;100(6):823-32
pubmed: 19202837
Proc Biol Sci. 2013 Oct 30;280(1773):20132242
pubmed: 24174111
ISME J. 2022 May;16(5):1275-1283
pubmed: 34903848
ISME J. 2023 Apr;17(4):570-578
pubmed: 36707614
Int Microbiol. 2003 Sep;6(3):191-9
pubmed: 12898399
Annu Rev Phytopathol. 2017 Aug 4;55:23-39
pubmed: 28489498
Front Plant Sci. 2020 Feb 06;11:37
pubmed: 32117376
J Bacteriol. 1970 Nov;104(2):989-1009
pubmed: 4099103
Biol Rev Camb Philos Soc. 1963 May;38(2):141-66
pubmed: 4873455
Microb Cell Fact. 2006 Feb 13;5:5
pubmed: 16472407
FEMS Microbiol Rev. 2018 May 1;42(3):293-323
pubmed: 29447350
FEMS Microbiol Rev. 2005 Sep;29(4):795-811
pubmed: 16102603
ISME J. 2018 Feb;12(2):312-319
pubmed: 29135971
Environ Microbiol. 2002 Dec;4(12):799-808
pubmed: 12534463
Microb Ecol. 2018 Feb;75(2):289-292
pubmed: 28791465
Stud Mycol. 2018 Mar;89:117-124
pubmed: 29910518
Curr Biol. 2019 Jan 21;29(2):217-228.e4
pubmed: 30612903
Appl Environ Microbiol. 1988 Aug;54(8):2037-41
pubmed: 16347713
New Phytol. 2003 Mar;157(3):493-502
pubmed: 33873407
Front Microbiol. 2019 Mar 29;10:619
pubmed: 31001214
PLoS One. 2013 Dec 31;8(12):e83661
pubmed: 24391805
Trends Ecol Evol. 2021 Sep;36(9):787-796
pubmed: 34172318
Front Microbiol. 2019 Nov 29;10:2726
pubmed: 31849878
Nature. 2005 Apr 7;434(7034):732-7
pubmed: 15815622
FEMS Microbiol Rev. 2018 May 1;42(3):335-352
pubmed: 29471481
J Bacteriol. 1990 Mar;172(3):1180-5
pubmed: 2106504
Environ Sci Technol. 2005 Jun 15;39(12):4640-6
pubmed: 16047804
Nat Methods. 2012 Jul;9(7):671-5
pubmed: 22930834
FEMS Microbiol Ecol. 2000 Mar 1;31(3):185-194
pubmed: 10719199
Appl Environ Microbiol. 2015 Feb;81(3):821-30
pubmed: 25398872
Commun Biol. 2021 Feb 26;4(1):262
pubmed: 33637874
Environ Microbiol. 2020 Aug;22(8):3548-3560
pubmed: 32558213

Auteurs

Matteo Buffi (M)

Laboratory of Microbiology, University of Neuchâtel, Rue Emile-Argand 11, 2000 Neuchâtel, Switzerland.

Guillaume Cailleau (G)

Laboratory of Microbiology, University of Neuchâtel, Rue Emile-Argand 11, 2000 Neuchâtel, Switzerland.

Thierry Kuhn (T)

Laboratory of Microbiology, University of Neuchâtel, Rue Emile-Argand 11, 2000 Neuchâtel, Switzerland.
Laboratory of Eco-Ethology, University of Neuchâtel, Rue Emile-Argand 11, 2000 Neuchâtel, Switzerland.

Xiang-Yi Li Richter (XY)

Laboratory of Microbiology, University of Neuchâtel, Rue Emile-Argand 11, 2000 Neuchâtel, Switzerland.
Laboratory of Eco-Ethology, University of Neuchâtel, Rue Emile-Argand 11, 2000 Neuchâtel, Switzerland.

Claire E Stanley (CE)

Department of Bioengineering, Imperial College London, B304, Bessemer Building, South Kensington Campus, SW7 2AZ, London, United Kingdom.

Lukas Y Wick (LY)

Department of Environmental Microbiology, Helmholtz Centre for Environmental Research - UFZ, Permoserstrasse 15, 04318 Leipzig, Germany.

Patrick S Chain (PS)

Bioscience Division, Los Alamos National Laboratory, Los Alamos, P.O. Box 1663, NM 87545, United States.

Saskia Bindschedler (S)

Laboratory of Microbiology, University of Neuchâtel, Rue Emile-Argand 11, 2000 Neuchâtel, Switzerland.

Pilar Junier (P)

Laboratory of Microbiology, University of Neuchâtel, Rue Emile-Argand 11, 2000 Neuchâtel, Switzerland.

Classifications MeSH